1JP3 | Genus

Total Genus 80

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	80
sequence length	228
structure length	214
Chain Sequence	LPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Escherichia coli
publication title	Mechanism of product chain length determination and the role of a flexible loop in Escherichia coli undecaprenyl-pyrophosphate synthase catalysis. pubmed doi rcsb
molecule keywords	undecaprenyl pyrophosphate synthase
total genus	80
structure length	214
sequence length	228
chains with identical sequence	B
ec nomenclature	ec 2.5.1.31: Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-
pdb deposition date	2001-07-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01255	Prenyltransf	Putative undecaprenyl diphosphate synthase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1180.10	Alpha Beta	3-Layer(aba) Sandwich	Undecaprenyl pyrophosphate synthetase	Decaprenyl diphosphate synthase-like	1jp3A00

3QASA 4CMVA 4CMWA 4H3AA 3UGSA 5HC6A 2VG4A 2E98A 5KH5A 3SGTA 4H2MA 4KT8A 3TH8A 1X08A 4U82A 4H38A 4Q9MA 3SH0A 5CQJA 5HXNA 5KH2A 2VG3A 3WQKA 2E9DA 3WYJA 2VG0A 2D2RA 3SGXA 2E9AA 5KH4A 1X06A 5HXOA 2E99A 5HXQA 5HC7A 2E9CA 2VG1A 3WQNA 3WQLA 3WYIA 5HXPA 4H2OA 1V7UA 1F75A 2VFWA 4Q9OA 1UEHA 5HC8A 2DTNA 3SGVA 3WQMA 4ONCA 5CQBA 4CMXA 5HXTA 2VG2A 1X09A 1X07A 1JP3A 4H2JA 4H3CA 4H8EA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3QAS A;  4CMV A;  4CMW A;  4H3A A;  3UGS A;  5HC6 A;  2VG4 A;  2E98 A;  5KH5 A;  3SGT A;  4H2M A;  4KT8 A;  3TH8 A;  1X08 A;  4U82 A;  4H38 A;  4Q9M A;  3SH0 A;  5CQJ A;  5HXN A;  5KH2 A;  2VG3 A;  3WQK A;  2E9D A;  3WYJ A;  2VG0 A;  2D2R A;  3SGX A;  2E9A A;  5KH4 A;  1X06 A;  5HXO A;  2E99 A;  5HXQ A;  5HC7 A;  2E9C A;  2VG1 A;  3WQN A;  3WQL A;  3WYI A;  5HXP A;  4H2O A;  1V7U A;  1F75 A;  2VFW A;  4Q9O A;  1UEH A;  5HC8 A;  2DTN A;  3SGV A;  3WQM A;  4ONC A;  5CQB A;  4CMX A;  5HXT A;  2VG2 A;  1X09 A;  1X07 A;  1JP3 A;  4H2J A;  4H3C A;  4H8E A; 
#chains in the Genus database with same CATH topology
 3QAS A;  4CMV A;  4CMW A;  4H3A A;  3UGS A;  5HC6 A;  2VG4 A;  2E98 A;  5KH5 A;  3SGT A;  4H2M A;  4KT8 A;  3TH8 A;  1X08 A;  4U82 A;  4H38 A;  4Q9M A;  3SH0 A;  5CQJ A;  5HXN A;  5KH2 A;  2VG3 A;  3WQK A;  2E9D A;  3WYJ A;  2VG0 A;  2D2R A;  3SGX A;  2E9A A;  5KH4 A;  1X06 A;  5HXO A;  2E99 A;  5HXQ A;  5HC7 A;  2E9C A;  2VG1 A;  3WQN A;  3WQL A;  3WYI A;  5HXP A;  4H2O A;  1V7U A;  1F75 A;  2VFW A;  4Q9O A;  1UEH A;  5HC8 A;  2DTN A;  3SGV A;  3WQM A;  4ONC A;  5CQB A;  4CMX A;  5HXT A;  2VG2 A;  1X09 A;  1X07 A;  1JP3 A;  4H2J A;  4H3C A;  4H8E A; 
#chains in the Genus database with same CATH homology
 3QAS A;  4CMV A;  4CMW A;  4H3A A;  3UGS A;  5HC6 A;  2VG4 A;  2E98 A;  5KH5 A;  3SGT A;  4H2M A;  4KT8 A;  3TH8 A;  1X08 A;  4U82 A;  4H38 A;  4Q9M A;  3SH0 A;  5CQJ A;  5HXN A;  5KH2 A;  2VG3 A;  3WQK A;  2E9D A;  3WYJ A;  2VG0 A;  2D2R A;  3SGX A;  2E9A A;  5KH4 A;  1X06 A;  5HXO A;  2E99 A;  5HXQ A;  5HC7 A;  2E9C A;  2VG1 A;  3WQN A;  3WQL A;  3WYI A;  5HXP A;  4H2O A;  1V7U A;  1F75 A;  2VFW A;  4Q9O A;  1UEH A;  5HC8 A;  2DTN A;  3SGV A;  3WQM A;  4ONC A;  5CQB A;  4CMX A;  5HXT A;  2VG2 A;  1X09 A;  1X07 A;  1JP3 A;  4H2J A;  4H3C A;  4H8E A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1JP3A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations