1LOOA

Crystal structure of the mouse-muscle adenylosuccinate synthetase ligated with gtp
Total Genus 141
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
sequence length
431
structure length
431
Chain Sequence
AATGSRVTVVLGAQWGDEGKGKVVDLLATDADIVSRCQGGNNAGHTVVVDGKEYDFHLLPSGIINTKAVSFIGNGVVIHLPGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVDGLQEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSARFKNLAHQHQSMFPTLEIDVEGQLKRLKGFAERIRPMVRDGVYFMYEALHGPPKKVLVEGANAALLDIDFGTYPFVTSSNCTVGGVCTGLGIPPQNIGDVYGVVKAYTTRVGIGAFPTEQINEIGDLLQNRGHEWGVTTGRKRRCGWLDLMILRYAHMVNGFTALALTKLDILDVLSEIKVGISYKLNGKRIPYFPANQEILQKVEVEYETLPGWKADTTGARKWEDLPPQAQSYVRFVENHMGVAVKWVGVGKSRESMIQLF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title IMP, GTP, and 6-phosphoryl-IMP complexes of recombinant mouse muscle adenylosuccinate synthetase.
pubmed doi rcsb
molecule tags Ligase
source organism Mus musculus
molecule keywords adenylosuccinate synthetase
total genus 141
structure length 431
sequence length 431
ec nomenclature ec 6.3.4.4: Adenylosuccinate synthase.
pdb deposition date 2002-05-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00709 Adenylsucc_synt Adenylosuccinate synthetase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.300.10 Mainly Alpha Orthogonal Bundle Adenylosuccinate Synthetase, subunit A; domain 2 Adenylosuccinate Synthetase, subunit A, domain 2 1looA02
3.40.440.10 Alpha Beta 3-Layer(aba) Sandwich Adenylosuccinate Synthetase; Chain A, domain 1 Adenylosuccinate Synthetase, subunit A, domain 1 1looA01
3.90.170.10 Alpha Beta Alpha-Beta Complex Adenylosuccinate Synthetase; Chain A, domain 3 Adenylosuccinate Synthetase, subunit A, domain 3 1looA03
1GINA 1DJ2A 1SONA 1CG4A 1NHTA 3HIDA 1LNYA 3R7TA 1HONA 1KKBA 2V40A 1HOOA 1ADIA 1DJ3A 1ADEA 1LOOA 1J4BA 3UE9A 1IWEA 1HOPA 1KSZA 1KJXA 1MEZA 4M0GA 1GIMA 2GCQA 1KKFA 1QF4A 2D7UA 1JUYA 1LONA 1CH8A 4M9DA 1CG1A 1CG3A 5I34A 1SOOA 1MF1A 1P9BA 1MF0A 1CG0A 1CIBA 1QF5A 2DGNA
chains in the Genus database with same CATH superfamily
1GINA 1DJ2A 1SONA 1CG4A 1NHTA 3HIDA 1LNYA 3R7TA 1HONA 1KKBA 2V40A 1HOOA 1ADIA 1DJ3A 1ADEA 1LOOA 1J4BA 3UE9A 1IWEA 1HOPA 1KSZA 1KJXA 1MEZA 4M0GA 1GIMA 2GCQA 1KKFA 1QF4A 2D7UA 1JUYA 1LONA 1CH8A 4M9DA 1CG1A 1CG3A 5I34A 1SOOA 1MF1A 1P9BA 1MF0A 1CG0A 1CIBA 1QF5A 2DGNA
chains in the Genus database with same CATH topology
1GINA 1DJ2A 1SONA 1CG4A 1NHTA 3HIDA 1LNYA 3R7TA 1HONA 1KKBA 2V40A 1HOOA 1ADIA 1DJ3A 1ADEA 1LOOA 1J4BA 3UE9A 1IWEA 1HOPA 1KSZA 1KJXA 1MEZA 4M0GA 1GIMA 2GCQA 1KKFA 1QF4A 2D7UA 1JUYA 1LONA 1CH8A 4M9DA 1CG1A 1CG3A 5I34A 1SOOA 1MF1A 1P9BA 1MF0A 1CG0A 1CIBA 1QF5A 2DGNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GIN A;  1DJ2 A;  1SON A;  1CG4 A;  1NHT A;  3HID A;  1LNY A;  3R7T A;  1HON A;  1KKB A;  2V40 A;  1HOO A;  1ADI A;  1DJ3 A;  1ADE A;  1LOO A;  1J4B A;  3UE9 A;  1IWE A;  1HOP A;  1KSZ A;  1KJX A;  1MEZ A;  4M0G A;  1GIM A;  2GCQ A;  1KKF A;  1QF4 A;  2D7U A;  1JUY A;  1LON A;  1CH8 A;  4M9D A;  1CG1 A;  1CG3 A;  5I34 A;  1SOO A;  1MF1 A;  1P9B A;  1MF0 A;  1CG0 A;  1CIB A;  1QF5 A;  2DGN A; 
#chains in the Genus database with same CATH topology
 1GIN A;  1DJ2 A;  1SON A;  1CG4 A;  1NHT A;  3HID A;  1LNY A;  3R7T A;  1HON A;  1KKB A;  2V40 A;  1HOO A;  1ADI A;  1DJ3 A;  1ADE A;  1LOO A;  1J4B A;  3UE9 A;  1IWE A;  1HOP A;  1KSZ A;  1KJX A;  1MEZ A;  4M0G A;  1GIM A;  2GCQ A;  1KKF A;  1QF4 A;  2D7U A;  1JUY A;  1LON A;  1CH8 A;  4M9D A;  1CG1 A;  1CG3 A;  5I34 A;  1SOO A;  1MF1 A;  1P9B A;  1MF0 A;  1CG0 A;  1CIB A;  1QF5 A;  2DGN A; 
#chains in the Genus database with same CATH homology
 1GIN A;  1DJ2 A;  1SON A;  1CG4 A;  1NHT A;  3HID A;  1LNY A;  3R7T A;  1HON A;  1KKB A;  2V40 A;  1HOO A;  1ADI A;  1DJ3 A;  1ADE A;  1LOO A;  1J4B A;  3UE9 A;  1IWE A;  1HOP A;  1KSZ A;  1KJX A;  1MEZ A;  4M0G A;  1GIM A;  2GCQ A;  1KKF A;  1QF4 A;  2D7U A;  1JUY A;  1LON A;  1CH8 A;  4M9D A;  1CG1 A;  1CG3 A;  5I34 A;  1SOO A;  1MF1 A;  1P9B A;  1MF0 A;  1CG0 A;  1CIB A;  1QF5 A;  2DGN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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