The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
129
|
sequence length |
437
|
structure length |
424
|
Chain Sequence |
LSPAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLNLVVVPMADLINHSAGVTTEDHAYEVYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPYLRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRELKEGNLDSRLAIAVGIREGEKMVLQQIDGIFEQKELELDQLEYYQERRLKDLGLCGENGDILENLY
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure and catalytic mechanism of a SET domain protein methyltransferase.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Pisum sativum
|
| molecule keywords |
Ribulose-1,5 biphosphate carboxylase/oxygenase large subunit
|
| total genus |
129
|
| structure length |
424
|
| sequence length |
437
|
| chains with identical sequence |
B, C
|
| ec nomenclature |
ec
2.1.1.127: [Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase. |
| pdb deposition date | 2002-08-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00856 | SET | SET domain |
| A | PF09273 | Rubis-subs-bind | Rubisco LSMT substrate-binding |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | set domain protein methyltransferase, domain 1 | set domain protein methyltransferase, domain 1 | ||
| Alpha Beta | Alpha-Beta Complex | set domain protein methyltransferase, domain 2 | Rubisco LSMT, substrate-binding domain |
#chains in the Genus database with same CATH superfamily 3RC0 A; 2H2E A; 1P0Y A; 1OZV A; 2H21 A; 3SMT A; 2H2J A; 1MLV A; 3QXY A; 2H23 A; #chains in the Genus database with same CATH topology 3RC0 A; 2H2E A; 1P0Y A; 1OZV A; 2H21 A; 3SMT A; 2H2J A; 1MLV A; 3QXY A; 2H23 A; #chains in the Genus database with same CATH homology 3RC0 A; 2H2E A; 1P0Y A; 1OZV A; 2H21 A; 3SMT A; 2H2J A; 1MLV A; 3QXY A; 2H23 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
