The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
55
|
sequence length |
148
|
structure length |
146
|
Chain Sequence |
MDIKRYCPVTDSELPADHVYFKFRSEIEAAEAYLGLAISEGIKVRETREILDIIDTVYNSLSDSKLNDFQEKRLNFTEEDWYDIKEKANNGNRWSLYMFLARSAVDSAVYWSYRMKETEEFKEIVKEEMISKLLKAGYVILRESLG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of the hypothetical protein TA1238 from Thermoplasma acidophilum: a new type of helical super-bundle.
pubmed doi rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Thermoplasma acidophilum
|
| molecule keywords |
hypothetical protein TA1238
|
| total genus |
55
|
| structure length |
146
|
| sequence length |
148
|
| ec nomenclature | |
| pdb deposition date | 2002-12-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF09155 | DUF1940 | Domain of unknown function (DUF1940) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Hypothetical Protein Ta1238; Chain: A; | Cobalamin adenosyltransferase-like |
#chains in the Genus database with same CATH superfamily 2AH6 A; 1NIG A; 2R6X A; 1WOZ A; 2ZHY A; 3GAH A; 3KE5 A; 3KE4 A; 5CY5 A; 3CI1 A; 2IDX A; 5CY5 B; 2ZHZ A; 1WVT A; 4NWQ A; 4NWP A; 2NT8 A; 2R6T A; 1NOG A; 1RTY A; 2G2D A; 1WY1 A; 3GAI A; 3CI3 A; 3GAJ A; 3CI4 A; #chains in the Genus database with same CATH topology 2AH6 A; 1NIG A; 2R6X A; 1WOZ A; 2ZHY A; 3GAH A; 3KE5 A; 3KE4 A; 5CY5 A; 3CI1 A; 2IDX A; 5CY5 B; 2ZHZ A; 1WVT A; 4NWQ A; 4NWP A; 2NT8 A; 2R6T A; 1NOG A; 1RTY A; 2G2D A; 1WY1 A; 3GAI A; 3CI3 A; 3GAJ A; 3CI4 A; #chains in the Genus database with same CATH homology 2AH6 A; 1NIG A; 2R6X A; 1WOZ A; 2ZHY A; 3GAH A; 3KE5 A; 3KE4 A; 5CY5 A; 3CI1 A; 2IDX A; 5CY5 B; 2ZHZ A; 1WVT A; 4NWQ A; 4NWP A; 2NT8 A; 2R6T A; 1NOG A; 1RTY A; 2G2D A; 1WY1 A; 3GAI A; 3CI3 A; 3GAJ A; 3CI4 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
