The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
3
|
sequence length |
48
|
structure length |
48
|
Chain Sequence |
KKKCIAKDYGRCKWGGTPCCRGRGCICSIMGTNCECKPRLIMEGLGLA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Three-dimensional solution structure of the calcium channel antagonist omega-agatoxin IVA: consensus molecular folding of calcium channel blockers.
pubmed doi rcsb |
| molecule tags |
Neurotoxin
|
| source organism |
Agelenopsis aperta
|
| molecule keywords |
OMEGA-AGATOXIN IVA
|
| total genus |
3
|
| structure length |
48
|
| sequence length |
48
|
| ec nomenclature | |
| pdb deposition date | 1995-06-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02819 | Toxin_9 | Spider toxin |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Few Secondary Structures | Irregular | Omega-AgatoxinV | Omega-AgatoxinV |
#chains in the Genus database with same CATH superfamily 1IVA A; 1OAV A; 1VTX A; 1OMA A; 1QDP A; 1AGG A; 1G9P A; 1OAW A; 2ROO A; #chains in the Genus database with same CATH topology 1IVA A; 1OAV A; 1BOE A; 1CIX A; 1VTX A; 1HY9 A; 1XI7 A; 1XJ1 A; 1OMA A; 1QDP A; 1AGG A; 1G9P A; 2DCV A; 1OAW A; 1H59 B; 2DCW A; 2ROO A; #chains in the Genus database with same CATH homology 1IVA A; 1OAV A; 1BOE A; 1CIX A; 1VTX A; 1XI7 A; 1XJ1 A; 1OMA A; 1QDP A; 1AGG A; 1G9P A; 2DCV A; 1OAW A; 1H59 B; 2DCW A; 2ROO A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
