1P51A

Anabaena hu-dna cocrystal structure (ahu6)
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
92
structure length
92
Chain Sequence
MNKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREGRNPKTNEKMEIPATRVPAFSAGKLFREKVAPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein/dna
source organism Anabaena sp.
publication title Flexible DNA bending in HU-DNA cocrystal structures
pubmed doi rcsb
molecule keywords 5'-D(*GP*CP*AP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*TP*GP*CP*AP*
total genus 23
structure length 92
sequence length 92
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2003-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00216 Bac_DNA_binding Bacterial DNA-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.520.10 Few Secondary Structures Irregular HU Protein; Chain A IHF-like DNA-binding proteins 1p51A00
1EXEA 1OUZA 1HUUA 4YEWC 1WTUA 3RHIA 2HT0B 4N1VA 1P78A 4QJNA 4YEYA 1MULA 1P71A 1IHFA 2IIEA 1B8ZA 4YFTA 1RIYA 2O97A 1OWFA 4PT4A 1P51A 1OUZB 5EKAA 4QJUA 4YF0A 5FBMA 1OWGA 1HUEA 4YFTC 1IHFB 2HT0A 4P3VA 4FMRA 5L8ZA 4YEXA 2O97B 4YEWA 1OWFB 2NDPA 2NP2A 4DKYA 4YFHA 2IIFA 1OWGB
chains in the Genus database with same CATH superfamily
1EXEA 1OUZA 1HUUA 4YEWC 1WTUA 3RHIA 2HT0B 4N1VA 1P78A 4QJNA 4YEYA 1MULA 1P71A 1IHFA 2IIEA 1B8ZA 4YFTA 1RIYA 2O97A 1OWFA 4PT4A 1P51A 1OUZB 5EKAA 4QJUA 4YF0A 5FBMA 1OWGA 1HUEA 4YFTC 1IHFB 2HT0A 4P3VA 4FMRA 5L8ZA 4YEXA 2O97B 4YEWA 1OWFB 2NDPA 2NP2A 4DKYA 4YFHA 2IIFA 1OWGB
chains in the Genus database with same CATH topology
1EXEA 1OUZA 1HUUA 4YEWC 1WTUA 3RHIA 2HT0B 4N1VA 1P78A 4QJNA 4YEYA 1MULA 1P71A 1IHFA 2IIEA 1B8ZA 4YFTA 1RIYA 2O97A 1OWFA 4PT4A 1P51A 1OUZB 5EKAA 4QJUA 4YF0A 5FBMA 1OWGA 1HUEA 4YFTC 1IHFB 2HT0A 4P3VA 4FMRA 5L8ZA 4YEXA 2O97B 4YEWA 1OWFB 2NDPA 2NP2A 4DKYA 4YFHA 2IIFA 1OWGB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EXE A;  1OUZ A;  1HUU A;  4YEW C;  1WTU A;  3RHI A;  2HT0 B;  4N1V A;  1P78 A;  4QJN A;  4YEY A;  1MUL A;  1P71 A;  1IHF A;  2IIE A;  1B8Z A;  4YFT A;  1RIY A;  2O97 A;  1OWF A;  4PT4 A;  1P51 A;  1OUZ B;  5EKA A;  4QJU A;  4YF0 A;  5FBM A;  1OWG A;  1HUE A;  4YFT C;  1IHF B;  2HT0 A;  4P3V A;  4FMR A;  5L8Z A;  4YEX A;  2O97 B;  4YEW A;  1OWF B;  2NDP A;  2NP2 A;  4DKY A;  4YFH A;  2IIF A;  1OWG B; 
#chains in the Genus database with same CATH topology
 1EXE A;  1OUZ A;  1HUU A;  4YEW C;  1WTU A;  3RHI A;  2HT0 B;  4N1V A;  1P78 A;  4QJN A;  4YEY A;  1MUL A;  1P71 A;  1IHF A;  2IIE A;  1B8Z A;  4YFT A;  1RIY A;  2O97 A;  1OWF A;  4PT4 A;  1P51 A;  1OUZ B;  5EKA A;  4QJU A;  4YF0 A;  5FBM A;  1OWG A;  1HUE A;  4YFT C;  1IHF B;  2HT0 A;  4P3V A;  4FMR A;  5L8Z A;  4YEX A;  2O97 B;  4YEW A;  1OWF B;  2NDP A;  2NP2 A;  4DKY A;  4YFH A;  2IIF A;  1OWG B; 
#chains in the Genus database with same CATH homology
 1EXE A;  1OUZ A;  1HUU A;  4YEW C;  1WTU A;  3RHI A;  2HT0 B;  4N1V A;  1P78 A;  4QJN A;  4YEY A;  1MUL A;  1P71 A;  1IHF A;  2IIE A;  1B8Z A;  4YFT A;  1RIY A;  2O97 A;  1OWF A;  4PT4 A;  1P51 A;  1OUZ B;  5EKA A;  4QJU A;  4YF0 A;  5FBM A;  1OWG A;  1HUE A;  4YFT C;  1IHF B;  2HT0 A;  4P3V A;  4FMR A;  5L8Z A;  4YEX A;  2O97 B;  4YEW A;  1OWF B;  2NDP A;  2NP2 A;  4DKY A;  4YFH A;  2IIF A;  1OWG B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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