1P78A

Anabaena hu-dna cocrystal structure (ahu2)
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
92
structure length
92
Chain Sequence
MNKGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREGRNPKTNEKMEIPATRVPAFSAGKLFREKVAPP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (48-55)S1 (42-44)TII1 (44-47)AH3 (83-89)S3 (58-61)TI1 (63-66)S5 (74-81)TIV2 (62-65)AH1 (3-14)AH2 (18-38)S4 (68-71)Updating...
connected with : NaN
publication title Flexible DNA bending in HU-DNA cocrystal structures
pubmed doi rcsb
molecule keywords 5'-D(*TP*GP*CP*AP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*TP*GP*CP*
molecule tags Dna binding protein/dna
source organism Anabaena sp.
total genus 22
structure length 92
sequence length 92
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00216 Bac_DNA_binding Bacterial DNA-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.520.10 Few Secondary Structures Irregular HU Protein; Chain A IHF-like DNA-binding proteins 1p78A00
1OWFA 5FBMA 4PT4A 2O97A 4YFTC 4FMRA 1RIYA 3RHIA 1OUZB 5EKAA 4YF0A 1EXEA 4QJNA 4YEWA 1OUZA 5L8ZA 4YEYA 2IIFA 1WTUA 2HT0B 4N1VA 1IHFB 1B8ZA 2IIEA 1HUEA 2HT0A 2NDPA 4P3VA 4YFTA 4YEWC 1IHFA 1P78A 4DKYA 1MULA 1HUUA 4YEXA 2NP2A 1OWGB 1P51A 4YFHA 1OWGA 1OWFB 4QJUA 1P71A 2O97B
chains in the Genus database with same CATH superfamily
1OWFA 5FBMA 4PT4A 2O97A 4YFTC 4FMRA 1RIYA 3RHIA 1OUZB 5EKAA 4YF0A 1EXEA 4QJNA 4YEWA 1OUZA 5L8ZA 4YEYA 2IIFA 1WTUA 2HT0B 4N1VA 1IHFB 1B8ZA 2IIEA 1HUEA 2HT0A 2NDPA 4P3VA 4YFTA 4YEWC 1IHFA 1P78A 4DKYA 1MULA 1HUUA 4YEXA 2NP2A 1OWGB 1P51A 4YFHA 1OWGA 1OWFB 4QJUA 1P71A 2O97B
chains in the Genus database with same CATH topology
1OWFA 5FBMA 4PT4A 2O97A 4YFTC 4FMRA 1RIYA 3RHIA 1OUZB 5EKAA 4YF0A 1EXEA 4QJNA 4YEWA 1OUZA 5L8ZA 4YEYA 2IIFA 1WTUA 2HT0B 4N1VA 1IHFB 1B8ZA 2IIEA 1HUEA 2HT0A 2NDPA 4P3VA 4YFTA 4YEWC 1IHFA 1P78A 4DKYA 1MULA 1HUUA 4YEXA 2NP2A 1OWGB 1P51A 4YFHA 1OWGA 1OWFB 4QJUA 1P71A 2O97B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OWF A;  5FBM A;  4PT4 A;  2O97 A;  4YFT C;  4FMR A;  1RIY A;  3RHI A;  1OUZ B;  5EKA A;  4YF0 A;  1EXE A;  4QJN A;  4YEW A;  1OUZ A;  5L8Z A;  4YEY A;  2IIF A;  1WTU A;  2HT0 B;  4N1V A;  1IHF B;  1B8Z A;  2IIE A;  1HUE A;  2HT0 A;  2NDP A;  4P3V A;  4YFT A;  4YEW C;  1IHF A;  1P78 A;  4DKY A;  1MUL A;  1HUU A;  4YEX A;  2NP2 A;  1OWG B;  1P51 A;  4YFH A;  1OWG A;  1OWF B;  4QJU A;  1P71 A;  2O97 B; 
#chains in the Genus database with same CATH topology
 1OWF A;  5FBM A;  4PT4 A;  2O97 A;  4YFT C;  4FMR A;  1RIY A;  3RHI A;  1OUZ B;  5EKA A;  4YF0 A;  1EXE A;  4QJN A;  4YEW A;  1OUZ A;  5L8Z A;  4YEY A;  2IIF A;  1WTU A;  2HT0 B;  4N1V A;  1IHF B;  1B8Z A;  2IIE A;  1HUE A;  2HT0 A;  2NDP A;  4P3V A;  4YFT A;  4YEW C;  1IHF A;  1P78 A;  4DKY A;  1MUL A;  1HUU A;  4YEX A;  2NP2 A;  1OWG B;  1P51 A;  4YFH A;  1OWG A;  1OWF B;  4QJU A;  1P71 A;  2O97 B; 
#chains in the Genus database with same CATH homology
 1OWF A;  5FBM A;  4PT4 A;  2O97 A;  4YFT C;  4FMR A;  1RIY A;  3RHI A;  1OUZ B;  5EKA A;  4YF0 A;  1EXE A;  4QJN A;  4YEW A;  1OUZ A;  5L8Z A;  4YEY A;  2IIF A;  1WTU A;  2HT0 B;  4N1V A;  1IHF B;  1B8Z A;  2IIE A;  1HUE A;  2HT0 A;  2NDP A;  4P3V A;  4YFT A;  4YEW C;  1IHF A;  1P78 A;  4DKY A;  1MUL A;  1HUU A;  4YEX A;  2NP2 A;  1OWG B;  1P51 A;  4YFH A;  1OWG A;  1OWF B;  4QJU A;  1P71 A;  2O97 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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