1RIYA

Hu mutant v42i from thermotoga maritima
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
90
structure length
71
Chain Sequence
MNKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKIQIVGFGSFEVRKRKVPKFKPGKALKEKVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
source organism Thermotoga maritima
publication title The structure of the DNA binding protein HU Thermotoga maritima with a single conservative substitution (V42I) that confers significant destabilisation
rcsb
molecule keywords Hu DNA-binding protein
total genus 22
structure length 71
sequence length 90
ec nomenclature
pdb deposition date 2003-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00216 Bac_DNA_binding Bacterial DNA-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.520.10 Few Secondary Structures Irregular HU Protein; Chain A IHF-like DNA-binding proteins 1riyA00
4N1VA 4PT4A 4YFTC 1OWGB 4FMRA 4YEWA 4YEWC 5L8ZA 1RIYA 4QJUA 1P71A 4YFHA 1P51A 2NDPA 4DKYA 1MULA 1OWFA 2NP2A 4P3VA 5EKAA 4YF0A 2O97A 1IHFA 1HUEA 4YEXA 1B8ZA 3RHIA 4QJNA 1OWFB 2IIEA 1HUUA 2IIFA 5FBMA 2O97B 1IHFB 2HT0A 1OUZA 2HT0B 1OWGA 4YEYA 1P78A 1WTUA 1OUZB 1EXEA 4YFTA
chains in the Genus database with same CATH superfamily
4N1VA 4PT4A 4YFTC 1OWGB 4FMRA 4YEWA 4YEWC 5L8ZA 1RIYA 4QJUA 1P71A 4YFHA 1P51A 2NDPA 4DKYA 1MULA 1OWFA 2NP2A 4P3VA 5EKAA 4YF0A 2O97A 1IHFA 1HUEA 4YEXA 1B8ZA 3RHIA 4QJNA 1OWFB 2IIEA 1HUUA 2IIFA 5FBMA 2O97B 1IHFB 2HT0A 1OUZA 2HT0B 1OWGA 4YEYA 1P78A 1WTUA 1OUZB 1EXEA 4YFTA
chains in the Genus database with same CATH topology
4N1VA 4PT4A 4YFTC 1OWGB 4FMRA 4YEWA 4YEWC 5L8ZA 1RIYA 4QJUA 1P71A 4YFHA 1P51A 2NDPA 4DKYA 1MULA 1OWFA 2NP2A 4P3VA 5EKAA 4YF0A 2O97A 1IHFA 1HUEA 4YEXA 1B8ZA 3RHIA 4QJNA 1OWFB 2IIEA 1HUUA 2IIFA 5FBMA 2O97B 1IHFB 2HT0A 1OUZA 2HT0B 1OWGA 4YEYA 1P78A 1WTUA 1OUZB 1EXEA 4YFTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4N1V A;  4PT4 A;  4YFT C;  1OWG B;  4FMR A;  4YEW A;  4YEW C;  5L8Z A;  1RIY A;  4QJU A;  1P71 A;  4YFH A;  1P51 A;  2NDP A;  4DKY A;  1MUL A;  1OWF A;  2NP2 A;  4P3V A;  5EKA A;  4YF0 A;  2O97 A;  1IHF A;  1HUE A;  4YEX A;  1B8Z A;  3RHI A;  4QJN A;  1OWF B;  2IIE A;  1HUU A;  2IIF A;  5FBM A;  2O97 B;  1IHF B;  2HT0 A;  1OUZ A;  2HT0 B;  1OWG A;  4YEY A;  1P78 A;  1WTU A;  1OUZ B;  1EXE A;  4YFT A; 
#chains in the Genus database with same CATH topology
 4N1V A;  4PT4 A;  4YFT C;  1OWG B;  4FMR A;  4YEW A;  4YEW C;  5L8Z A;  1RIY A;  4QJU A;  1P71 A;  4YFH A;  1P51 A;  2NDP A;  4DKY A;  1MUL A;  1OWF A;  2NP2 A;  4P3V A;  5EKA A;  4YF0 A;  2O97 A;  1IHF A;  1HUE A;  4YEX A;  1B8Z A;  3RHI A;  4QJN A;  1OWF B;  2IIE A;  1HUU A;  2IIF A;  5FBM A;  2O97 B;  1IHF B;  2HT0 A;  1OUZ A;  2HT0 B;  1OWG A;  4YEY A;  1P78 A;  1WTU A;  1OUZ B;  1EXE A;  4YFT A; 
#chains in the Genus database with same CATH homology
 4N1V A;  4PT4 A;  4YFT C;  1OWG B;  4FMR A;  4YEW A;  4YEW C;  5L8Z A;  1RIY A;  4QJU A;  1P71 A;  4YFH A;  1P51 A;  2NDP A;  4DKY A;  1MUL A;  1OWF A;  2NP2 A;  4P3V A;  5EKA A;  4YF0 A;  2O97 A;  1IHF A;  1HUE A;  4YEX A;  1B8Z A;  3RHI A;  4QJN A;  1OWF B;  2IIE A;  1HUU A;  2IIF A;  5FBM A;  2O97 B;  1IHF B;  2HT0 A;  1OUZ A;  2HT0 B;  1OWG A;  4YEY A;  1P78 A;  1WTU A;  1OUZ B;  1EXE A;  4YFT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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