1RIYA

Hu mutant v42i from thermotoga maritima
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
90
structure length
71
Chain Sequence
MNKKELIDRVAKKAGAKKKDVKLILDTILETITEALAKGEKIQIVGFGSFEVRKRKVPKFKPGKALKEKVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
source organism Thermotoga maritima
publication title The structure of the DNA binding protein HU Thermotoga maritima with a single conservative substitution (V42I) that confers significant destabilisation
rcsb
molecule keywords Hu DNA-binding protein
total genus 22
structure length 71
sequence length 90
ec nomenclature
pdb deposition date 2003-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00216 Bac_DNA_binding Bacterial DNA-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.520.10 Few Secondary Structures Irregular HU Protein; Chain A IHF-like DNA-binding proteins 1riyA00
1OWFB 4YF0A 4YFHA 2O97A 2O97B 2NDPA 4YFTA 1HUUA 4YEXA 4YFTC 1P71A 1WTUA 2NP2A 4YEWA 4PT4A 1P78A 4YEWC 5L8ZA 4QJNA 4QJUA 1HUEA 1B8ZA 4P3VA 3RHIA 1EXEA 1MULA 2IIEA 2IIFA 4N1VA 2HT0A 1OWGA 2HT0B 1OUZA 1P51A 4YEYA 1OWGB 5EKAA 1IHFA 1OUZB 1IHFB 5FBMA 1RIYA 4DKYA 1OWFA 4FMRA
chains in the Genus database with same CATH superfamily
1OWFB 4YF0A 4YFHA 2O97A 2O97B 2NDPA 4YFTA 1HUUA 4YEXA 4YFTC 1P71A 1WTUA 2NP2A 4YEWA 4PT4A 1P78A 4YEWC 5L8ZA 4QJNA 4QJUA 1HUEA 1B8ZA 4P3VA 3RHIA 1EXEA 1MULA 2IIEA 2IIFA 4N1VA 2HT0A 1OWGA 2HT0B 1OUZA 1P51A 4YEYA 1OWGB 5EKAA 1IHFA 1OUZB 1IHFB 5FBMA 1RIYA 4DKYA 1OWFA 4FMRA
chains in the Genus database with same CATH topology
1OWFB 4YF0A 4YFHA 2O97A 2O97B 2NDPA 4YFTA 1HUUA 4YEXA 4YFTC 1P71A 1WTUA 2NP2A 4YEWA 4PT4A 1P78A 4YEWC 5L8ZA 4QJNA 4QJUA 1HUEA 1B8ZA 4P3VA 3RHIA 1EXEA 1MULA 2IIEA 2IIFA 4N1VA 2HT0A 1OWGA 2HT0B 1OUZA 1P51A 4YEYA 1OWGB 5EKAA 1IHFA 1OUZB 1IHFB 5FBMA 1RIYA 4DKYA 1OWFA 4FMRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OWF B;  4YF0 A;  4YFH A;  2O97 A;  2O97 B;  2NDP A;  4YFT A;  1HUU A;  4YEX A;  4YFT C;  1P71 A;  1WTU A;  2NP2 A;  4YEW A;  4PT4 A;  1P78 A;  4YEW C;  5L8Z A;  4QJN A;  4QJU A;  1HUE A;  1B8Z A;  4P3V A;  3RHI A;  1EXE A;  1MUL A;  2IIE A;  2IIF A;  4N1V A;  2HT0 A;  1OWG A;  2HT0 B;  1OUZ A;  1P51 A;  4YEY A;  1OWG B;  5EKA A;  1IHF A;  1OUZ B;  1IHF B;  5FBM A;  1RIY A;  4DKY A;  1OWF A;  4FMR A; 
#chains in the Genus database with same CATH topology
 1OWF B;  4YF0 A;  4YFH A;  2O97 A;  2O97 B;  2NDP A;  4YFT A;  1HUU A;  4YEX A;  4YFT C;  1P71 A;  1WTU A;  2NP2 A;  4YEW A;  4PT4 A;  1P78 A;  4YEW C;  5L8Z A;  4QJN A;  4QJU A;  1HUE A;  1B8Z A;  4P3V A;  3RHI A;  1EXE A;  1MUL A;  2IIE A;  2IIF A;  4N1V A;  2HT0 A;  1OWG A;  2HT0 B;  1OUZ A;  1P51 A;  4YEY A;  1OWG B;  5EKA A;  1IHF A;  1OUZ B;  1IHF B;  5FBM A;  1RIY A;  4DKY A;  1OWF A;  4FMR A; 
#chains in the Genus database with same CATH homology
 1OWF B;  4YF0 A;  4YFH A;  2O97 A;  2O97 B;  2NDP A;  4YFT A;  1HUU A;  4YEX A;  4YFT C;  1P71 A;  1WTU A;  2NP2 A;  4YEW A;  4PT4 A;  1P78 A;  4YEW C;  5L8Z A;  4QJN A;  4QJU A;  1HUE A;  1B8Z A;  4P3V A;  3RHI A;  1EXE A;  1MUL A;  2IIE A;  2IIF A;  4N1V A;  2HT0 A;  1OWG A;  2HT0 B;  1OUZ A;  1P51 A;  4YEY A;  1OWG B;  5EKA A;  1IHF A;  1OUZ B;  1IHF B;  5FBM A;  1RIY A;  4DKY A;  1OWF A;  4FMR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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