1SEHA

Crystal structure of e. coli dutpase complexed with the product dump
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
141
structure length
140
Chain Sequence
MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (11-14)TII1 (13-16)TIV2 (15-18)TVIII3 (37-40)TI2 (25-28)TIV3 (23-26)EMPTYS4 (47-58)S3 (41-43)S8 (96-103)TII2 (44-47)TI5 (90-93)TI3 (61-64)S5 (64-70)S10 (115-124)AH1 (72-78)S6 (80-82)TI4 (82-85)TIV4 (84-87)TII3 (112-115)S1 (6-9)TVIII1 (9-12)S2 (30-35)S7 (87-89)S9 (109-111)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Escherichia coli
publication title Structural Insights into the Catalytic Mechanism of Phosphate Ester Hydrolysis by dUTPase
pubmed doi rcsb
molecule keywords Deoxyuridine 5'-triphosphate nucleotidohydrolase
total genus 22
structure length 140
sequence length 141
ec nomenclature ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date 2004-02-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 1sehA00
3TPWA 4AOOA 1Q5UX 4WRKA 4B0HA 2QLPA 2QXXA 2Y8CA 1SYLA 2HRMA 1SEHA 3I93A 4OOPA 4OOQA 1DUDA 2WE3A 3ZF4A 1DUPA 1PKHA 1SIXA 3ZF0A 3TTAA 1RNJA 1PKJA 1OGHA 2J4HA 4AOZA 1XS4A 4GCYA 1F7OA 1F7RA 2XX6A 1F7DA 2YZJA 1Q5HA 3MDXA 3F4FA 3TQ3A 2BAZA 3ZEZA 3ARNA 3TS6A 1F7NA 1MQ7A 3H6XA 4DHKA 3LQWA 3HHQA 2OL1A 2OKEA 2WE2A 1SM8A 3TQZA 1SLHA 3ZF5A 5EDDA 2V9XA 3T70A 2XY3A 3GF0A 4APZ1 3MBQA 2HXBA 2OKBA 2XCEA 3TRNA 3TPSA 3T60A 3TP1A 3TPNA 2HR6A 3SO2A 1DUTA 3T64A 5CCOA 2Y1TA 3ZF6A 3TPYA 1F7PA 1EU5A 3T6YA 1F7QA 1VYQA 2OL0A 3ZF1A 1F7KA 2J4QA 1XS6A 1SMCA 5CCTA 3TQ4A 4GK6A 3CA9A 3ZF3A 2PY4A 3TQ5A 3HZAA 2D4NA 2WE1A 5ECTA 2OKDA 4LHRA 1DUNA 3TSLA 4A6AA 3LOJA 3KM3A 2WE0A 2PC5A 2R9QA 3P48A 3C3IA 3EHWA 1DUCA 4GV8A 2HQUA 2XCDA 1XS1A 1SNFA 2HXDA 2D4LA 1EUWA 5F9KA 3ZF2A 3TRLA 2BT1A 3C2TA 4AO5A 1PKKA 2ZDCA 1SJNA 3H6DA 2BSYA 3ECYA 3ARAA 4XJCA 2D4MA 1RN8A
chains in the Genus database with same CATH superfamily
3TPWA 4AOOA 1Q5UX 4WRKA 4B0HA 2QLPA 2QXXA 2Y8CA 1SYLA 2HRMA 1SEHA 3I93A 4OOPA 4OOQA 1DUDA 2WE3A 3ZF4A 1DUPA 1PKHA 1SIXA 3ZF0A 3TTAA 1RNJA 1PKJA 1OGHA 2J4HA 4AOZA 1XS4A 4GCYA 1F7OA 1F7RA 2XX6A 1F7DA 2YZJA 1Q5HA 3MDXA 3F4FA 3TQ3A 2BAZA 3ZEZA 3ARNA 3TS6A 1F7NA 1MQ7A 3H6XA 4DHKA 3LQWA 3HHQA 2OL1A 2OKEA 2WE2A 1TULA 1SM8A 3TQZA 1SLHA 3ZF5A 5EDDA 2V9XA 3T70A 2XY3A 3GF0A 4APZ1 3MBQA 2HXBA 2OKBA 2XCEA 3TRNA 3TPSA 3T60A 3TP1A 3TPNA 2HR6A 3SO2A 1DUTA 3T64A 5CCOA 2Y1TA 3ZF6A 3TPYA 1F7PA 1EU5A 3T6YA 1F7QA 1VYQA 2OL0A 3ZF1A 1F7KA 2J4QA 1XS6A 1SMCA 5CCTA 3TQ4A 4GK6A 3CA9A 3ZF3A 2PY4A 3TQ5A 3HZAA 2D4NA 2WE1A 5ECTA 2OKDA 4LHRA 1DUNA 3TSLA 4A6AA 3LOJA 3KM3A 2WE0A 2PC5A 2R9QA 3P48A 3C3IA 3EHWA 1DUCA 4GV8A 2HQUA 2XCDA 1XS1A 1SNFA 2HXDA 2D4LA 1EUWA 5F9KA 3ZF2A 3TRLA 2BT1A 3C2TA 4AO5A 1PKKA 2ZDCA 1SJNA 3H6DA 2BSYA 3ECYA 3ARAA 4XJCA 2D4MA 1RN8A
chains in the Genus database with same CATH topology
3TPWA 4AOOA 1Q5UX 4WRKA 4B0HA 2QLPA 2QXXA 2Y8CA 1SYLA 2HRMA 1SEHA 3I93A 4OOPA 4OOQA 1DUDA 2WE3A 3ZF4A 1DUPA 1PKHA 1SIXA 3ZF0A 3TTAA 1RNJA 1PKJA 1OGHA 2J4HA 4AOZA 1XS4A 4GCYA 1F7OA 1F7RA 2XX6A 1F7DA 2YZJA 1Q5HA 3MDXA 3F4FA 3TQ3A 2BAZA 3ZEZA 3ARNA 3TS6A 1F7NA 1MQ7A 3H6XA 4DHKA 3LQWA 3HHQA 2OL1A 2OKEA 2WE2A 1SM8A 3TQZA 1SLHA 3ZF5A 5EDDA 2V9XA 3T70A 2XY3A 3GF0A 4APZ1 3MBQA 2HXBA 2OKBA 2XCEA 3TRNA 3TPSA 3T60A 3TP1A 3TPNA 2HR6A 3SO2A 1DUTA 3T64A 5CCOA 2Y1TA 3ZF6A 3TPYA 1F7PA 1EU5A 3T6YA 1F7QA 1VYQA 2OL0A 3ZF1A 1F7KA 2J4QA 1XS6A 1SMCA 5CCTA 3TQ4A 4GK6A 3CA9A 3ZF3A 2PY4A 3TQ5A 3HZAA 2D4NA 2WE1A 5ECTA 2OKDA 4LHRA 1DUNA 3TSLA 4A6AA 3LOJA 3KM3A 2WE0A 2PC5A 2R9QA 3P48A 3C3IA 3EHWA 1DUCA 4GV8A 2HQUA 2XCDA 1XS1A 1SNFA 2HXDA 2D4LA 1EUWA 5F9KA 3ZF2A 3TRLA 2BT1A 3C2TA 4AO5A 1PKKA 2ZDCA 1SJNA 3H6DA 2BSYA 3ECYA 3ARAA 4XJCA 2D4MA 1RN8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TPW A;  4AOO A;  1Q5U X;  4WRK A;  4B0H A;  2QLP A;  2QXX A;  2Y8C A;  1SYL A;  2HRM A;  1SEH A;  3I93 A;  4OOP A;  4OOQ A;  1DUD A;  2WE3 A;  3ZF4 A;  1DUP A;  1PKH A;  1SIX A;  3ZF0 A;  3TTA A;  1RNJ A;  1PKJ A;  1OGH A;  2J4H A;  4AOZ A;  1XS4 A;  4GCY A;  1F7O A;  1F7R A;  2XX6 A;  1F7D A;  2YZJ A;  1Q5H A;  3MDX A;  3F4F A;  3TQ3 A;  2BAZ A;  3ZEZ A;  3ARN A;  3TS6 A;  1F7N A;  1MQ7 A;  3H6X A;  4DHK A;  3LQW A;  3HHQ A;  2OL1 A;  2OKE A;  2WE2 A;  1SM8 A;  3TQZ A;  1SLH A;  3ZF5 A;  5EDD A;  2V9X A;  3T70 A;  2XY3 A;  3GF0 A;  4APZ 1;  3MBQ A;  2HXB A;  2OKB A;  2XCE A;  3TRN A;  3TPS A;  3T60 A;  3TP1 A;  3TPN A;  2HR6 A;  3SO2 A;  1DUT A;  3T64 A;  5CCO A;  2Y1T A;  3ZF6 A;  3TPY A;  1F7P A;  1EU5 A;  3T6Y A;  1F7Q A;  1VYQ A;  2OL0 A;  3ZF1 A;  1F7K A;  2J4Q A;  1XS6 A;  1SMC A;  5CCT A;  3TQ4 A;  4GK6 A;  3CA9 A;  3ZF3 A;  2PY4 A;  3TQ5 A;  3HZA A;  2D4N A;  2WE1 A;  5ECT A;  2OKD A;  4LHR A;  1DUN A;  3TSL A;  4A6A A;  3LOJ A;  3KM3 A;  2WE0 A;  2PC5 A;  2R9Q A;  3P48 A;  3C3I A;  3EHW A;  1DUC A;  4GV8 A;  2HQU A;  2XCD A;  1XS1 A;  1SNF A;  2HXD A;  2D4L A;  1EUW A;  5F9K A;  3ZF2 A;  3TRL A;  2BT1 A;  3C2T A;  4AO5 A;  1PKK A;  2ZDC A;  1SJN A;  3H6D A;  2BSY A;  3ECY A;  3ARA A;  4XJC A;  2D4M A;  1RN8 A; 
#chains in the Genus database with same CATH topology
 3TPW A;  4AOO A;  1Q5U X;  4WRK A;  4B0H A;  2QLP A;  2QXX A;  2Y8C A;  1SYL A;  2HRM A;  1SEH A;  3I93 A;  4OOP A;  4OOQ A;  1DUD A;  2WE3 A;  3ZF4 A;  1DUP A;  1PKH A;  1SIX A;  3ZF0 A;  3TTA A;  1RNJ A;  1PKJ A;  1OGH A;  2J4H A;  4AOZ A;  1XS4 A;  4GCY A;  1F7O A;  1F7R A;  2XX6 A;  1F7D A;  2YZJ A;  1Q5H A;  3MDX A;  3F4F A;  3TQ3 A;  2BAZ A;  3ZEZ A;  3ARN A;  3TS6 A;  1F7N A;  1MQ7 A;  3H6X A;  4DHK A;  3LQW A;  3HHQ A;  2OL1 A;  2OKE A;  2WE2 A;  1TUL A;  1SM8 A;  3TQZ A;  1SLH A;  3ZF5 A;  5EDD A;  2V9X A;  3T70 A;  2XY3 A;  3GF0 A;  4APZ 1;  3MBQ A;  2HXB A;  2OKB A;  2XCE A;  3TRN A;  3TPS A;  3T60 A;  3TP1 A;  3TPN A;  2HR6 A;  3SO2 A;  1DUT A;  3T64 A;  5CCO A;  2Y1T A;  3ZF6 A;  3TPY A;  1F7P A;  1EU5 A;  3T6Y A;  1F7Q A;  1VYQ A;  2OL0 A;  3ZF1 A;  1F7K A;  2J4Q A;  1XS6 A;  1SMC A;  5CCT A;  3TQ4 A;  4GK6 A;  3CA9 A;  3ZF3 A;  2PY4 A;  3TQ5 A;  3HZA A;  2D4N A;  2WE1 A;  5ECT A;  2OKD A;  4LHR A;  1DUN A;  3TSL A;  4A6A A;  3LOJ A;  3KM3 A;  2WE0 A;  2PC5 A;  2R9Q A;  3P48 A;  3C3I A;  3EHW A;  1DUC A;  4GV8 A;  2HQU A;  2XCD A;  1XS1 A;  1SNF A;  2HXD A;  2D4L A;  1EUW A;  5F9K A;  3ZF2 A;  3TRL A;  2BT1 A;  3C2T A;  4AO5 A;  1PKK A;  2ZDC A;  1SJN A;  3H6D A;  2BSY A;  3ECY A;  3ARA A;  4XJC A;  2D4M A;  1RN8 A; 
#chains in the Genus database with same CATH homology
 3TPW A;  4AOO A;  1Q5U X;  4WRK A;  4B0H A;  2QLP A;  2QXX A;  2Y8C A;  1SYL A;  2HRM A;  1SEH A;  3I93 A;  4OOP A;  4OOQ A;  1DUD A;  2WE3 A;  3ZF4 A;  1DUP A;  1PKH A;  1SIX A;  3ZF0 A;  3TTA A;  1RNJ A;  1PKJ A;  1OGH A;  2J4H A;  4AOZ A;  1XS4 A;  4GCY A;  1F7O A;  1F7R A;  2XX6 A;  1F7D A;  2YZJ A;  1Q5H A;  3MDX A;  3F4F A;  3TQ3 A;  2BAZ A;  3ZEZ A;  3ARN A;  3TS6 A;  1F7N A;  1MQ7 A;  3H6X A;  4DHK A;  3LQW A;  3HHQ A;  2OL1 A;  2OKE A;  2WE2 A;  1SM8 A;  3TQZ A;  1SLH A;  3ZF5 A;  5EDD A;  2V9X A;  3T70 A;  2XY3 A;  3GF0 A;  4APZ 1;  3MBQ A;  2HXB A;  2OKB A;  2XCE A;  3TRN A;  3TPS A;  3T60 A;  3TP1 A;  3TPN A;  2HR6 A;  3SO2 A;  1DUT A;  3T64 A;  5CCO A;  2Y1T A;  3ZF6 A;  3TPY A;  1F7P A;  1EU5 A;  3T6Y A;  1F7Q A;  1VYQ A;  2OL0 A;  3ZF1 A;  1F7K A;  2J4Q A;  1XS6 A;  1SMC A;  5CCT A;  3TQ4 A;  4GK6 A;  3CA9 A;  3ZF3 A;  2PY4 A;  3TQ5 A;  3HZA A;  2D4N A;  2WE1 A;  5ECT A;  2OKD A;  4LHR A;  1DUN A;  3TSL A;  4A6A A;  3LOJ A;  3KM3 A;  2WE0 A;  2PC5 A;  2R9Q A;  3P48 A;  3C3I A;  3EHW A;  1DUC A;  4GV8 A;  2HQU A;  2XCD A;  1XS1 A;  1SNF A;  2HXD A;  2D4L A;  1EUW A;  5F9K A;  3ZF2 A;  3TRL A;  2BT1 A;  3C2T A;  4AO5 A;  1PKK A;  2ZDC A;  1SJN A;  3H6D A;  2BSY A;  3ECY A;  3ARA A;  4XJC A;  2D4M A;  1RN8 A; 
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