1SNF | Genus

Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	20
sequence length	131
structure length	131
Chain Sequence	STTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Mycobacterium tuberculosis
publication title	Crystal structure of the Mycobacterium tuberculosis dUTPase: insights into the catalytic mechanism. pubmed doi rcsb
molecule keywords	Deoxyuridine 5'-triphosphate nucleotidohydrolase
total genus	20
structure length	131
sequence length	131
chains with identical sequence	B, C
ec nomenclature	ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date	2004-03-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00692	dUTPase	dUTPase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.40.10	Mainly Beta	Distorted Sandwich	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A	Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A	1snfA00

3I93A 2ZDCA 1SJNA 5EDDA 2HXBA 3H6XA 3MDXA 3SO2A 3ZF6A 2R9QA 2XCEA 3C3IA 3CA9A 1F7PA 4XJCA 3ECYA 3KM3A 2PC5A 1F7QA 2OL1A 3ZF0A 3MBQA 1SNFA 1SIXA 3C2TA 3ARAA 2WE2A 3TPWA 4DHKA 3HHQA 1DUCA 4AOOA 2WE3A 3TQ5A 4APZ1 3LQWA 2PY4A 3ZF4A 1F7OA 4GV8A 2D4NA 4GK6A 2BT1A 2HR6A 2BSYA 4GCYA 1OGHA 3GF0A 1DUPA 5CCTA 2BAZA 3F4FA 3TRNA 3TPNA 3TQ4A 2V9XA 1F7RA 2WE0A 1SLHA 3ZF2A 1SEHA 4OOQA 2Y8CA 5ECTA 1F7KA 5F9KA 1PKJA 3ZEZA 3TP1A 2J4HA 2YZJA 2OKDA 2XX6A 3TS6A 2J4QA 1XS6A 3TSLA 1PKKA 3T60A 1DUDA 4WRKA 1RNJA 3P48A 3T70A 1EUWA 2HXDA 1Q5HA 4A6AA 4B0HA 1F7NA 1EU5A 1Q5UX 3TPSA 2WE1A 2OL0A 3T64A 2OKEA 2D4MA 3HZAA 2OKBA 3ARNA 4AO5A 2HQUA 5CCOA 1MQ7A 1XS1A 1SM8A 3ZF1A 2HRMA 3TPYA 2D4LA 1XS4A 3ZF5A 1PKHA 3EHWA 1RN8A 2Y1TA 3TQZA 3T6YA 3LOJA 1SMCA 2QXXA 1VYQA 3TTAA 1DUNA 3H6DA 3ZF3A 3TQ3A 1DUTA 2QLPA 4OOPA 3TRLA 2XCDA 1F7DA 4AOZA 1SYLA 4LHRA 2XY3A
chains in the Genus database with same CATH superfamily

3I93A 2ZDCA 1SJNA 5EDDA 2HXBA 3H6XA 3MDXA 3SO2A 3ZF6A 2R9QA 2XCEA 3C3IA 3CA9A 1F7PA 4XJCA 3ECYA 3KM3A 2PC5A 1F7QA 2OL1A 3ZF0A 3MBQA 1SNFA 1SIXA 3C2TA 3ARAA 2WE2A 1TULA 3TPWA 4DHKA 3HHQA 1DUCA 4AOOA 2WE3A 3TQ5A 4APZ1 3LQWA 2PY4A 3ZF4A 1F7OA 4GV8A 2D4NA 4GK6A 2BT1A 2HR6A 2BSYA 4GCYA 1OGHA 3GF0A 1DUPA 5CCTA 2BAZA 3F4FA 3TRNA 3TPNA 3TQ4A 2V9XA 1F7RA 2WE0A 1SLHA 3ZF2A 1SEHA 4OOQA 2Y8CA 5ECTA 1F7KA 5F9KA 1PKJA 3ZEZA 3TP1A 2J4HA 2YZJA 2OKDA 2XX6A 3TS6A 2J4QA 1XS6A 3TSLA 1PKKA 3T60A 1DUDA 4WRKA 1RNJA 3P48A 3T70A 1EUWA 2HXDA 1Q5HA 4A6AA 4B0HA 1F7NA 1EU5A 1Q5UX 3TPSA 2WE1A 2OL0A 3T64A 2OKEA 2D4MA 3HZAA 2OKBA 3ARNA 4AO5A 2HQUA 5CCOA 1MQ7A 1XS1A 1SM8A 3ZF1A 2HRMA 3TPYA 2D4LA 1XS4A 3ZF5A 1PKHA 3EHWA 1RN8A 2Y1TA 3TQZA 3T6YA 3LOJA 1SMCA 2QXXA 1VYQA 3TTAA 1DUNA 3H6DA 3ZF3A 3TQ3A 1DUTA 2QLPA 4OOPA 3TRLA 2XCDA 1F7DA 4AOZA 1SYLA 4LHRA 2XY3A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3I93 A;  2ZDC A;  1SJN A;  5EDD A;  2HXB A;  3H6X A;  3MDX A;  3SO2 A;  3ZF6 A;  2R9Q A;  2XCE A;  3C3I A;  3CA9 A;  1F7P A;  4XJC A;  3ECY A;  3KM3 A;  2PC5 A;  1F7Q A;  2OL1 A;  3ZF0 A;  3MBQ A;  1SNF A;  1SIX A;  3C2T A;  3ARA A;  2WE2 A;  3TPW A;  4DHK A;  3HHQ A;  1DUC A;  4AOO A;  2WE3 A;  3TQ5 A;  4APZ 1;  3LQW A;  2PY4 A;  3ZF4 A;  1F7O A;  4GV8 A;  2D4N A;  4GK6 A;  2BT1 A;  2HR6 A;  2BSY A;  4GCY A;  1OGH A;  3GF0 A;  1DUP A;  5CCT A;  2BAZ A;  3F4F A;  3TRN A;  3TPN A;  3TQ4 A;  2V9X A;  1F7R A;  2WE0 A;  1SLH A;  3ZF2 A;  1SEH A;  4OOQ A;  2Y8C A;  5ECT A;  1F7K A;  5F9K A;  1PKJ A;  3ZEZ A;  3TP1 A;  2J4H A;  2YZJ A;  2OKD A;  2XX6 A;  3TS6 A;  2J4Q A;  1XS6 A;  3TSL A;  1PKK A;  3T60 A;  1DUD A;  4WRK A;  1RNJ A;  3P48 A;  3T70 A;  1EUW A;  2HXD A;  1Q5H A;  4A6A A;  4B0H A;  1F7N A;  1EU5 A;  1Q5U X;  3TPS A;  2WE1 A;  2OL0 A;  3T64 A;  2OKE A;  2D4M A;  3HZA A;  2OKB A;  3ARN A;  4AO5 A;  2HQU A;  5CCO A;  1MQ7 A;  1XS1 A;  1SM8 A;  3ZF1 A;  2HRM A;  3TPY A;  2D4L A;  1XS4 A;  3ZF5 A;  1PKH A;  3EHW A;  1RN8 A;  2Y1T A;  3TQZ A;  3T6Y A;  3LOJ A;  1SMC A;  2QXX A;  1VYQ A;  3TTA A;  1DUN A;  3H6D A;  3ZF3 A;  3TQ3 A;  1DUT A;  2QLP A;  4OOP A;  3TRL A;  2XCD A;  1F7D A;  4AOZ A;  1SYL A;  4LHR A;  2XY3 A; 
#chains in the Genus database with same CATH topology
 3I93 A;  2ZDC A;  1SJN A;  5EDD A;  2HXB A;  3H6X A;  3MDX A;  3SO2 A;  3ZF6 A;  2R9Q A;  2XCE A;  3C3I A;  3CA9 A;  1F7P A;  4XJC A;  3ECY A;  3KM3 A;  2PC5 A;  1F7Q A;  2OL1 A;  3ZF0 A;  3MBQ A;  1SNF A;  1SIX A;  3C2T A;  3ARA A;  2WE2 A;  1TUL A;  3TPW A;  4DHK A;  3HHQ A;  1DUC A;  4AOO A;  2WE3 A;  3TQ5 A;  4APZ 1;  3LQW A;  2PY4 A;  3ZF4 A;  1F7O A;  4GV8 A;  2D4N A;  4GK6 A;  2BT1 A;  2HR6 A;  2BSY A;  4GCY A;  1OGH A;  3GF0 A;  1DUP A;  5CCT A;  2BAZ A;  3F4F A;  3TRN A;  3TPN A;  3TQ4 A;  2V9X A;  1F7R A;  2WE0 A;  1SLH A;  3ZF2 A;  1SEH A;  4OOQ A;  2Y8C A;  5ECT A;  1F7K A;  5F9K A;  1PKJ A;  3ZEZ A;  3TP1 A;  2J4H A;  2YZJ A;  2OKD A;  2XX6 A;  3TS6 A;  2J4Q A;  1XS6 A;  3TSL A;  1PKK A;  3T60 A;  1DUD A;  4WRK A;  1RNJ A;  3P48 A;  3T70 A;  1EUW A;  2HXD A;  1Q5H A;  4A6A A;  4B0H A;  1F7N A;  1EU5 A;  1Q5U X;  3TPS A;  2WE1 A;  2OL0 A;  3T64 A;  2OKE A;  2D4M A;  3HZA A;  2OKB A;  3ARN A;  4AO5 A;  2HQU A;  5CCO A;  1MQ7 A;  1XS1 A;  1SM8 A;  3ZF1 A;  2HRM A;  3TPY A;  2D4L A;  1XS4 A;  3ZF5 A;  1PKH A;  3EHW A;  1RN8 A;  2Y1T A;  3TQZ A;  3T6Y A;  3LOJ A;  1SMC A;  2QXX A;  1VYQ A;  3TTA A;  1DUN A;  3H6D A;  3ZF3 A;  3TQ3 A;  1DUT A;  2QLP A;  4OOP A;  3TRL A;  2XCD A;  1F7D A;  4AOZ A;  1SYL A;  4LHR A;  2XY3 A; 
#chains in the Genus database with same CATH homology
 3I93 A;  2ZDC A;  1SJN A;  5EDD A;  2HXB A;  3H6X A;  3MDX A;  3SO2 A;  3ZF6 A;  2R9Q A;  2XCE A;  3C3I A;  3CA9 A;  1F7P A;  4XJC A;  3ECY A;  3KM3 A;  2PC5 A;  1F7Q A;  2OL1 A;  3ZF0 A;  3MBQ A;  1SNF A;  1SIX A;  3C2T A;  3ARA A;  2WE2 A;  3TPW A;  4DHK A;  3HHQ A;  1DUC A;  4AOO A;  2WE3 A;  3TQ5 A;  4APZ 1;  3LQW A;  2PY4 A;  3ZF4 A;  1F7O A;  4GV8 A;  2D4N A;  4GK6 A;  2BT1 A;  2HR6 A;  2BSY A;  4GCY A;  1OGH A;  3GF0 A;  1DUP A;  5CCT A;  2BAZ A;  3F4F A;  3TRN A;  3TPN A;  3TQ4 A;  2V9X A;  1F7R A;  2WE0 A;  1SLH A;  3ZF2 A;  1SEH A;  4OOQ A;  2Y8C A;  5ECT A;  1F7K A;  5F9K A;  1PKJ A;  3ZEZ A;  3TP1 A;  2J4H A;  2YZJ A;  2OKD A;  2XX6 A;  3TS6 A;  2J4Q A;  1XS6 A;  3TSL A;  1PKK A;  3T60 A;  1DUD A;  4WRK A;  1RNJ A;  3P48 A;  3T70 A;  1EUW A;  2HXD A;  1Q5H A;  4A6A A;  4B0H A;  1F7N A;  1EU5 A;  1Q5U X;  3TPS A;  2WE1 A;  2OL0 A;  3T64 A;  2OKE A;  2D4M A;  3HZA A;  2OKB A;  3ARN A;  4AO5 A;  2HQU A;  5CCO A;  1MQ7 A;  1XS1 A;  1SM8 A;  3ZF1 A;  2HRM A;  3TPY A;  2D4L A;  1XS4 A;  3ZF5 A;  1PKH A;  3EHW A;  1RN8 A;  2Y1T A;  3TQZ A;  3T6Y A;  3LOJ A;  1SMC A;  2QXX A;  1VYQ A;  3TTA A;  1DUN A;  3H6D A;  3ZF3 A;  3TQ3 A;  1DUT A;  2QLP A;  4OOP A;  3TRL A;  2XCD A;  1F7D A;  4AOZ A;  1SYL A;  4LHR A;  2XY3 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1SNFA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations