1SS8A

Groel
Total Genus 182
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
524
structure length
524
Chain Sequence
AAKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Exploring the structural dynamics of the E.coli chaperonin GroEL using translation-libration-screw crystallographic refinement of intermediate states.
pubmed doi rcsb
molecule tags Chaperone
source organism Escherichia coli
molecule keywords groEL protein
total genus 182
structure length 524
sequence length 524
chains with identical sequence B, C, D, E, F, G
ec nomenclature
pdb deposition date 2004-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00118 Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.560.10 Mainly Alpha Orthogonal Bundle GROEL; domain 1 GroEL-like equatorial domain 1ss8A01
3.30.260.10 Alpha Beta 2-Layer Sandwich GROEL; domain 2 TCP-1-like chaperonin intermediate domain 1ss8A02
3.50.7.10 Alpha Beta 3-Layer(bba) Sandwich GroEL GroEL 1ss8A03
1A6EA 3RTKA 1DK7A 3RUQA 1SRVA 3RUWA 4WSCA 4XCGB 4PKNA 3KO1A 1MNFA 4KI8A 4PJ1A 3AQ1B 5CDKA 2EU1A 1OELA 1PF9A 4XCGA 3RUVA 1SS8A 3VZ6A 1KP8A 1DKDA 4XCDA 1A6DB 4PKOA 1Q2VA 1XCKA 1SX4A 1IOKA 1ASSA 1LA1A 3OSXA 4XCIB 1Q3QA 1GMLA 1SJPA 1JONA 1A6DA 1SX3A 3KTTB 3KFEA 1ASXA 1KIDA 3M6CA 1Q3RA 1PCQA 4HELA 1GRLA 1A6EB 1AONA 1SVTA 1FYAA 3VZ8A 1E0RB 3RUSA 1FY9A 3VZ7A 5CDJA 3KFBA 3WVLA 1GN1A 5CDIA 2NWCA 1Q3SA 3E76A 4WGLA
chains in the Genus database with same CATH superfamily
1A6EA 3RTKA 1DK7A 3RUQA 1SRVA 3RUWA 4WSCA 4XCGB 4PKNA 3KO1A 1MNFA 4KI8A 4PJ1A 3AQ1B 5CDKA 2EU1A 1OELA 1PF9A 4XCGA 3RUVA 1SS8A 3VZ6A 1KP8A 1DKDA 4XCDA 1A6DB 4PKOA 1Q2VA 1XCKA 1SX4A 1IOKA 1ASSA 1LA1A 3OSXA 4MO1A 4XCIB 1Q3QA 1GMLA 1SJPA 1JONA 1A6DA 1SX3A 3KTTB 3KFEA 1ASXA 1KIDA 3M6CA 1Q3RA 1PCQA 4HELA 1GRLA 1A6EB 1AONA 1SVTA 1FYAA 3VZ8A 1E0RB 3RUSA 1FY9A 3VZ7A 5CDJA 3KFBA 3WVLA 1GN1A 5CDIA 2NWCA 1Q3SA 3E76A 4WGLA
chains in the Genus database with same CATH topology
1A6EA 3RTKA 1DK7A 3RUQA 1SRVA 3RUWA 4WSCA 4XCGB 4PKNA 3KO1A 1MNFA 4KI8A 4PJ1A 3AQ1B 5CDKA 2EU1A 1OELA 1PF9A 4XCGA 3RUVA 1SS8A 3VZ6A 1KP8A 1DKDA 4XCDA 1A6DB 4PKOA 1Q2VA 1XCKA 1SX4A 1IOKA 1ASSA 1LA1A 3OSXA 4XCIB 1Q3QA 1GMLA 1SJPA 1JONA 1A6DA 1SX3A 3KTTB 3KFEA 1ASXA 1KIDA 3M6CA 1Q3RA 1PCQA 4HELA 1GRLA 1A6EB 1AONA 1SVTA 1FYAA 3VZ8A 1E0RB 3RUSA 1FY9A 3VZ7A 5CDJA 3KFBA 3WVLA 1GN1A 5CDIA 2NWCA 1Q3SA 3E76A 4WGLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1A6E A;  3RTK A;  1DK7 A;  3RUQ A;  1SRV A;  3RUW A;  4WSC A;  4XCG B;  4PKN A;  3KO1 A;  1MNF A;  4KI8 A;  4PJ1 A;  3AQ1 B;  5CDK A;  2EU1 A;  1OEL A;  1PF9 A;  4XCG A;  3RUV A;  1SS8 A;  3VZ6 A;  1KP8 A;  1DKD A;  4XCD A;  1A6D B;  4PKO A;  1Q2V A;  1XCK A;  1SX4 A;  1IOK A;  1ASS A;  1LA1 A;  3OSX A;  4XCI B;  1Q3Q A;  1GML A;  1SJP A;  1JON A;  1A6D A;  1SX3 A;  3KTT B;  3KFE A;  1ASX A;  1KID A;  3M6C A;  1Q3R A;  1PCQ A;  4HEL A;  1GRL A;  1A6E B;  1AON A;  1SVT A;  1FYA A;  3VZ8 A;  1E0R B;  3RUS A;  1FY9 A;  3VZ7 A;  5CDJ A;  3KFB A;  3WVL A;  1GN1 A;  5CDI A;  2NWC A;  1Q3S A;  3E76 A;  4WGL A; 
#chains in the Genus database with same CATH topology
 1A6E A;  3RTK A;  1DK7 A;  3RUQ A;  1SRV A;  3RUW A;  4WSC A;  4XCG B;  4PKN A;  3KO1 A;  1MNF A;  4KI8 A;  4PJ1 A;  3AQ1 B;  5CDK A;  2EU1 A;  1OEL A;  1PF9 A;  4XCG A;  3RUV A;  1SS8 A;  3VZ6 A;  1KP8 A;  1DKD A;  4XCD A;  1A6D B;  4PKO A;  1Q2V A;  1XCK A;  1SX4 A;  1IOK A;  1ASS A;  1LA1 A;  3OSX A;  4MO1 A;  4XCI B;  1Q3Q A;  1GML A;  1SJP A;  1JON A;  1A6D A;  1SX3 A;  3KTT B;  3KFE A;  1ASX A;  1KID A;  3M6C A;  1Q3R A;  1PCQ A;  4HEL A;  1GRL A;  1A6E B;  1AON A;  1SVT A;  1FYA A;  3VZ8 A;  1E0R B;  3RUS A;  1FY9 A;  3VZ7 A;  5CDJ A;  3KFB A;  3WVL A;  1GN1 A;  5CDI A;  2NWC A;  1Q3S A;  3E76 A;  4WGL A; 
#chains in the Genus database with same CATH homology
 1A6E A;  3RTK A;  1DK7 A;  3RUQ A;  1SRV A;  3RUW A;  4WSC A;  4XCG B;  4PKN A;  3KO1 A;  1MNF A;  4KI8 A;  4PJ1 A;  3AQ1 B;  5CDK A;  2EU1 A;  1OEL A;  1PF9 A;  4XCG A;  3RUV A;  1SS8 A;  3VZ6 A;  1KP8 A;  1DKD A;  4XCD A;  1A6D B;  4PKO A;  1Q2V A;  1XCK A;  1SX4 A;  1IOK A;  1ASS A;  1LA1 A;  3OSX A;  4XCI B;  1Q3Q A;  1GML A;  1SJP A;  1JON A;  1A6D A;  1SX3 A;  3KTT B;  3KFE A;  1ASX A;  1KID A;  3M6C A;  1Q3R A;  1PCQ A;  4HEL A;  1GRL A;  1A6E B;  1AON A;  1SVT A;  1FYA A;  3VZ8 A;  1E0R B;  3RUS A;  1FY9 A;  3VZ7 A;  5CDJ A;  3KFB A;  3WVL A;  1GN1 A;  5CDI A;  2NWC A;  1Q3S A;  3E76 A;  4WGL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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