The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
172
|
sequence length |
525
|
structure length |
525
|
Chain Sequence |
AAKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Exploring the structural dynamics of the E.coli chaperonin GroEL using translation-libration-screw crystallographic refinement of intermediate states.
pubmed doi rcsb |
| molecule keywords |
groEL protein
|
| molecule tags |
Chaperone
|
| source organism |
Escherichia coli
|
| total genus |
172
|
| structure length |
525
|
| sequence length |
525
|
| chains with identical sequence |
B, C, D, E, F, G, H, I, J, K, L, M, N
|
| ec nomenclature | |
| pdb deposition date | 2004-03-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00118 | Cpn60_TCP1 | TCP-1/cpn60 chaperonin family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | GROEL; domain 1 | GroEL-like equatorial domain | ||
| Alpha Beta | 2-Layer Sandwich | GROEL; domain 2 | TCP-1-like chaperonin intermediate domain | ||
| Alpha Beta | 3-Layer(bba) Sandwich | GroEL | GroEL |
#chains in the Genus database with same CATH superfamily 3KTT B; 1XCK A; 4HEL A; 1ASS A; 4PKN A; 1GN1 A; 3VZ6 A; 4XCG B; 4XCG A; 1SVT A; 1A6E B; 1Q3Q A; 1Q3R A; 1A6E A; 3WVL A; 1DKD A; 5CDK A; 3KFB A; 1SRV A; 1A6D B; 1FY9 A; 3RTK A; 1OEL A; 2NWC A; 1A6D A; 1KP8 A; 3AQ1 B; 5CDJ A; 1AON A; 1SX3 A; 1ASX A; 1JON A; 1LA1 A; 4PKO A; 3VZ7 A; 4XCD A; 3KFE A; 3RUS A; 3KO1 A; 5CDI A; 1DK7 A; 1PF9 A; 3OSX A; 1E0R B; 1MNF A; 1GRL A; 1SX4 A; 4WSC A; 3RUW A; 1IOK A; 4PJ1 A; 1PCQ A; 1SS8 A; 1SJP A; 2EU1 A; 1Q3S A; 1FYA A; 3RUQ A; 1Q2V A; 3E76 A; 4WGL A; 3M6C A; 3VZ8 A; 1GML A; 1KID A; 4XCI B; 3RUV A; 4KI8 A; #chains in the Genus database with same CATH topology 3KTT B; 1XCK A; 4HEL A; 1ASS A; 4PKN A; 1GN1 A; 3VZ6 A; 4XCG B; 4XCG A; 1SVT A; 1A6E B; 1Q3Q A; 1Q3R A; 1A6E A; 3WVL A; 1DKD A; 5CDK A; 3KFB A; 1SRV A; 1A6D B; 1FY9 A; 3RTK A; 1OEL A; 2NWC A; 1A6D A; 1KP8 A; 3AQ1 B; 4MO1 A; 5CDJ A; 1AON A; 1SX3 A; 1ASX A; 1JON A; 1LA1 A; 4PKO A; 3VZ7 A; 4XCD A; 3KFE A; 3RUS A; 3KO1 A; 5CDI A; 1DK7 A; 1PF9 A; 3OSX A; 1E0R B; 1MNF A; 1GRL A; 1SX4 A; 4WSC A; 3RUW A; 1IOK A; 4PJ1 A; 1PCQ A; 1SS8 A; 1SJP A; 2EU1 A; 1Q3S A; 1FYA A; 3RUQ A; 1Q2V A; 3E76 A; 4WGL A; 3M6C A; 3VZ8 A; 1GML A; 1KID A; 4XCI B; 3RUV A; 4KI8 A; #chains in the Genus database with same CATH homology 3KTT B; 1XCK A; 4HEL A; 1ASS A; 4PKN A; 1GN1 A; 3VZ6 A; 4XCG B; 4XCG A; 1SVT A; 1A6E B; 1Q3Q A; 1Q3R A; 1A6E A; 3WVL A; 1DKD A; 5CDK A; 3KFB A; 1SRV A; 1A6D B; 1FY9 A; 3RTK A; 1OEL A; 2NWC A; 1A6D A; 1KP8 A; 3AQ1 B; 5CDJ A; 1AON A; 1SX3 A; 1ASX A; 1JON A; 1LA1 A; 4PKO A; 3VZ7 A; 4XCD A; 3KFE A; 3RUS A; 3KO1 A; 5CDI A; 1DK7 A; 1PF9 A; 3OSX A; 1E0R B; 1MNF A; 1GRL A; 1SX4 A; 4WSC A; 3RUW A; 1IOK A; 4PJ1 A; 1PCQ A; 1SS8 A; 1SJP A; 2EU1 A; 1Q3S A; 1FYA A; 3RUQ A; 1Q2V A; 3E76 A; 4WGL A; 3M6C A; 3VZ8 A; 1GML A; 1KID A; 4XCI B; 3RUV A; 4KI8 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
