1TIVA

Structural studies of hiv-1 tat protein
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
86
structure length
86
Chain Sequence
MDPVDPNIEPWNHPGSQPKTACNRCHCKKCCYHCQVCFIKKGLGISYGRKKRRQRRRPSQGGQTHQDPIPKQPSSQPRGDPTGPKE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural studies of HIV-1 Tat protein.
pubmed doi rcsb
molecule tags Transcription activation
source organism Human immunodeficiency virus 1
molecule keywords HIV-1 TRANSACTIVATOR PROTEIN
total genus 6
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 1995-02-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00539 Tat Transactivating regulatory protein (Tat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.20.10 Few Secondary Structures Irregular HIV-1 Transactivator Protein Tat domain 1tivA00
1TIVA 1TACA 1JFWA 1K5KA 1TBCA
chains in the Genus database with same CATH superfamily
1TIVA 1TACA 1JFWA 1K5KA 1TBCA
chains in the Genus database with same CATH topology
1TIVA 1TACA 1JFWA 1K5KA 1TBCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TIV A;  1TAC A;  1JFW A;  1K5K A;  1TBC A; 
#chains in the Genus database with same CATH topology
 1TIV A;  1TAC A;  1JFW A;  1K5K A;  1TBC A; 
#chains in the Genus database with same CATH homology
 1TIV A;  1TAC A;  1JFW A;  1K5K A;  1TBC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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