1UA8 | Genus

Total Genus 44

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	44
sequence length	182
structure length	174
Chain Sequence	DAASDLKSRLDKVSSFHASFTQKVTDGQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKANLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structures of bacterial lipoprotein localization factors, LolA and LolB. pubmed doi rcsb
molecule keywords	Outer-membrane lipoproteins carrier protein
molecule tags	Protein transport
source organism	Escherichia coli
total genus	44
structure length	174
sequence length	182
ec nomenclature
pdb deposition date	2003-03-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03548	LolA	Outer membrane lipoprotein carrier protein LolA

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.50.20.10	Mainly Beta	Clam	outer membrane lipoprotein receptor (LolB), chain A	Lipoprotein localisation LolA/LolB/LppX	1ua8A00

1IWMA 2ZPDA 1UA8A 3BK5A 4MXTA 3M4WA 4KI3A 3WJVA 2V42A 2W7QA 1IWNA 2ZPCA 4Z48A 1IWLA 2P4BA 3WJTA 2V43A 3KSNA 2YZYA 3BUUA 3WJUA
chains in the Genus database with same CATH superfamily

4QA8A 2ZF4A 1IWMA 2ZPDA 3BMZA 1UA8A 3BK5A 4MXTA 3M4WA 3MHAA 4KI3A 4ZRAA 4EGDA 3MH9A 3WJVA 2V42A 2W7QA 1IWNA 2ZPCA 4Z48A 1IWLA 2P4BA 3WJTA 3MH8A 2V43A 2BYOA 3KSNA 2YZYA 4EG9A 2ZF3A 3BUUA 3WJUA
chains in the Genus database with same CATH topology

1IWMA 2ZPDA 1UA8A 3BK5A 4MXTA 3M4WA 4KI3A 3WJVA 2V42A 2W7QA 1IWNA 2ZPCA 4Z48A 1IWLA 2P4BA 3WJTA 2V43A 3KSNA 2YZYA 3BUUA 3WJUA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1IWM A;  2ZPD A;  1UA8 A;  3BK5 A;  4MXT A;  3M4W A;  4KI3 A;  3WJV A;  2V42 A;  2W7Q A;  1IWN A;  2ZPC A;  4Z48 A;  1IWL A;  2P4B A;  3WJT A;  2V43 A;  3KSN A;  2YZY A;  3BUU A;  3WJU A; 
#chains in the Genus database with same CATH topology
 4QA8 A;  2ZF4 A;  1IWM A;  2ZPD A;  3BMZ A;  1UA8 A;  3BK5 A;  4MXT A;  3M4W A;  3MHA A;  4KI3 A;  4ZRA A;  4EGD A;  3MH9 A;  3WJV A;  2V42 A;  2W7Q A;  1IWN A;  2ZPC A;  4Z48 A;  1IWL A;  2P4B A;  3WJT A;  3MH8 A;  2V43 A;  2BYO A;  3KSN A;  2YZY A;  4EG9 A;  2ZF3 A;  3BUU A;  3WJU A; 
#chains in the Genus database with same CATH homology
 1IWM A;  2ZPD A;  1UA8 A;  3BK5 A;  4MXT A;  3M4W A;  4KI3 A;  3WJV A;  2V42 A;  2W7Q A;  1IWN A;  2ZPC A;  4Z48 A;  1IWL A;  2P4B A;  3WJT A;  2V43 A;  3KSN A;  2YZY A;  3BUU A;  3WJU A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1UA8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations