1V7U | Genus

Total Genus 90

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	90
sequence length	227
structure length	227
Chain Sequence	LPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 227 atoms

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227 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Escherichia coli
publication title	Substrate binding mode and reaction mechanism of undecaprenyl pyrophosphate synthase deduced from crystallographic studies pubmed doi rcsb
molecule keywords	Undecaprenyl pyrophosphate synthetase
total genus	90
structure length	227
sequence length	227
chains with identical sequence	B
ec nomenclature	ec 2.5.1.31: Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-
pdb deposition date	2003-12-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01255	Prenyltransf	Putative undecaprenyl diphosphate synthase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1180.10	Alpha Beta	3-Layer(aba) Sandwich	Undecaprenyl pyrophosphate synthetase	Decaprenyl diphosphate synthase-like	1v7uA00

2E9CA 3SGTA 4CMWA 5HC8A 1UEHA 4CMVA 3WQKA 2VG0A 1X07A 2VG2A 4Q9MA 5HXQA 4ONCA 3QASA 5HXTA 4H3AA 1X09A 2E9AA 5CQBA 4H8EA 4KT8A 3WQMA 2VFWA 1V7UA 3SGVA 2D2RA 4H2OA 2VG3A 4CMXA 5HC7A 2E99A 1X08A 4U82A 3SGXA 5CQJA 5KH4A 5HXOA 5HC6A 3SH0A 1F75A 1JP3A 5HXPA 2DTNA 2VG1A 4H2JA 3WYJA 3WQLA 4H2MA 3WQNA 2E98A 2VG4A 5HXNA 4H38A 5KH2A 2E9DA 5KH5A 3UGSA 3TH8A 1X06A 4Q9OA 4H3CA 3WYIA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2E9C A;  3SGT A;  4CMW A;  5HC8 A;  1UEH A;  4CMV A;  3WQK A;  2VG0 A;  1X07 A;  2VG2 A;  4Q9M A;  5HXQ A;  4ONC A;  3QAS A;  5HXT A;  4H3A A;  1X09 A;  2E9A A;  5CQB A;  4H8E A;  4KT8 A;  3WQM A;  2VFW A;  1V7U A;  3SGV A;  2D2R A;  4H2O A;  2VG3 A;  4CMX A;  5HC7 A;  2E99 A;  1X08 A;  4U82 A;  3SGX A;  5CQJ A;  5KH4 A;  5HXO A;  5HC6 A;  3SH0 A;  1F75 A;  1JP3 A;  5HXP A;  2DTN A;  2VG1 A;  4H2J A;  3WYJ A;  3WQL A;  4H2M A;  3WQN A;  2E98 A;  2VG4 A;  5HXN A;  4H38 A;  5KH2 A;  2E9D A;  5KH5 A;  3UGS A;  3TH8 A;  1X06 A;  4Q9O A;  4H3C A;  3WYI A; 
#chains in the Genus database with same CATH topology
 2E9C A;  3SGT A;  4CMW A;  5HC8 A;  1UEH A;  4CMV A;  3WQK A;  2VG0 A;  1X07 A;  2VG2 A;  4Q9M A;  5HXQ A;  4ONC A;  3QAS A;  5HXT A;  4H3A A;  1X09 A;  2E9A A;  5CQB A;  4H8E A;  4KT8 A;  3WQM A;  2VFW A;  1V7U A;  3SGV A;  2D2R A;  4H2O A;  2VG3 A;  4CMX A;  5HC7 A;  2E99 A;  1X08 A;  4U82 A;  3SGX A;  5CQJ A;  5KH4 A;  5HXO A;  5HC6 A;  3SH0 A;  1F75 A;  1JP3 A;  5HXP A;  2DTN A;  2VG1 A;  4H2J A;  3WYJ A;  3WQL A;  4H2M A;  3WQN A;  2E98 A;  2VG4 A;  5HXN A;  4H38 A;  5KH2 A;  2E9D A;  5KH5 A;  3UGS A;  3TH8 A;  1X06 A;  4Q9O A;  4H3C A;  3WYI A; 
#chains in the Genus database with same CATH homology
 2E9C A;  3SGT A;  4CMW A;  5HC8 A;  1UEH A;  4CMV A;  3WQK A;  2VG0 A;  1X07 A;  2VG2 A;  4Q9M A;  5HXQ A;  4ONC A;  3QAS A;  5HXT A;  4H3A A;  1X09 A;  2E9A A;  5CQB A;  4H8E A;  4KT8 A;  3WQM A;  2VFW A;  1V7U A;  3SGV A;  2D2R A;  4H2O A;  2VG3 A;  4CMX A;  5HC7 A;  2E99 A;  1X08 A;  4U82 A;  3SGX A;  5CQJ A;  5KH4 A;  5HXO A;  5HC6 A;  3SH0 A;  1F75 A;  1JP3 A;  5HXP A;  2DTN A;  2VG1 A;  4H2J A;  3WYJ A;  3WQL A;  4H2M A;  3WQN A;  2E98 A;  2VG4 A;  5HXN A;  4H38 A;  5KH2 A;  2E9D A;  5KH5 A;  3UGS A;  3TH8 A;  1X06 A;  4Q9O A;  4H3C A;  3WYI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1V7UA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations