The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
92
|
sequence length |
309
|
structure length |
309
|
Chain Sequence |
QYYELRDFALGTSVRIVVSSQKINPRTIAEAILEDMKRITYKFSFTDERSVVKKINDHPNEWVEVDEETYSLIKAACAFAELTDGAFDPTVGRLLELWGFTGNYENLRVPSREEIEEALKHTGYKNVLFDDKNMRVMVKNGVKIDLGGIAKGYALDRARQIALSFDENATGFVEAGGDVRIIGPKFGKYPWVIGVKDPRGDDVIDYIYLKSGAVATSGDYERYFVVDGVRYHHILDPSTGYPARGVWSVTIIAEDATTADALSTAGFVMAGKDWRKVVLDFPNMGAHLLIVLEGGAIERSETFKLFERE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of the ApbE protein (TM1553) from Thermotoga maritima at 1.58 A resolution.
pubmed doi rcsb |
| molecule tags |
Biosynthetic protein
|
| source organism |
Thermotoga maritima
|
| molecule keywords |
hypothetical protein TM1553
|
| total genus |
92
|
| structure length |
309
|
| sequence length |
309
|
| ec nomenclature | |
| pdb deposition date | 2005-03-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02424 | ApbE | ApbE family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | T-fold | ApbE-like superfamily | ||
| Alpha Beta | Roll | T-fold | ApbE-like domains |
#chains in the Genus database with same CATH superfamily 1VRM A; 2O34 A; #chains in the Genus database with same CATH topology 4IFX A; 1VRM A; 4IFZ A; 2O18 A; 4XDR A; 2O34 A; 4IFW A; 4XGV A; 3PND A; 4XDU A; 4XGW A; 4XGX A; 4IG1 A; 5MGY A; 4IFU A; 4XDT A; #chains in the Genus database with same CATH homology 1VRM A; 2O34 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
