1X07 | Genus

Total Genus 84

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	84
sequence length	231
structure length	231
Chain Sequence	SEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 231 atoms

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231 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structures of undecaprenyl pyrophosphate synthase in complex with magnesium, isopentenyl pyrophosphate, and farnesyl thiopyrophosphate: roles of the metal ion and conserved residues in catalysis. pubmed doi rcsb
molecule keywords	Undecaprenyl pyrophosphate synthetase
molecule tags	Transferase
source organism	Escherichia coli
total genus	84
structure length	231
sequence length	231
ec nomenclature	ec 2.5.1.31: Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-
pdb deposition date	2005-03-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01255	Prenyltransf	Putative undecaprenyl diphosphate synthase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1180.10	Alpha Beta	3-Layer(aba) Sandwich	Undecaprenyl pyrophosphate synthetase	Decaprenyl diphosphate synthase-like	1x07A00

5KH5A 1UEHA 2DTNA 2VG2A 1V7UA 2E9CA 4H38A 4ONCA 2E9DA 1X09A 4H2MA 4H3CA 4H3AA 5HC6A 3UGSA 3WQLA 2E99A 4KT8A 4Q9MA 3WYIA 5HXQA 5HXTA 3SGVA 1X07A 1X08A 2E9AA 2VG3A 3SH0A 5KH2A 2D2RA 5HC8A 5KH4A 2E98A 5HXPA 1JP3A 2VG1A 4H2OA 4Q9OA 2VG4A 3QASA 4U82A 5HXOA 5HC7A 5CQBA 3SGTA 4CMXA 3SGXA 4CMVA 2VG0A 3TH8A 4H8EA 5CQJA 4CMWA 3WQKA 3WQMA 5HXNA 2VFWA 3WQNA 3WYJA 4H2JA 1X06A 1F75A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 5KH5 A;  1UEH A;  2DTN A;  2VG2 A;  1V7U A;  2E9C A;  4H38 A;  4ONC A;  2E9D A;  1X09 A;  4H2M A;  4H3C A;  4H3A A;  5HC6 A;  3UGS A;  3WQL A;  2E99 A;  4KT8 A;  4Q9M A;  3WYI A;  5HXQ A;  5HXT A;  3SGV A;  1X07 A;  1X08 A;  2E9A A;  2VG3 A;  3SH0 A;  5KH2 A;  2D2R A;  5HC8 A;  5KH4 A;  2E98 A;  5HXP A;  1JP3 A;  2VG1 A;  4H2O A;  4Q9O A;  2VG4 A;  3QAS A;  4U82 A;  5HXO A;  5HC7 A;  5CQB A;  3SGT A;  4CMX A;  3SGX A;  4CMV A;  2VG0 A;  3TH8 A;  4H8E A;  5CQJ A;  4CMW A;  3WQK A;  3WQM A;  5HXN A;  2VFW A;  3WQN A;  3WYJ A;  4H2J A;  1X06 A;  1F75 A; 
#chains in the Genus database with same CATH topology
 5KH5 A;  1UEH A;  2DTN A;  2VG2 A;  1V7U A;  2E9C A;  4H38 A;  4ONC A;  2E9D A;  1X09 A;  4H2M A;  4H3C A;  4H3A A;  5HC6 A;  3UGS A;  3WQL A;  2E99 A;  4KT8 A;  4Q9M A;  3WYI A;  5HXQ A;  5HXT A;  3SGV A;  1X07 A;  1X08 A;  2E9A A;  2VG3 A;  3SH0 A;  5KH2 A;  2D2R A;  5HC8 A;  5KH4 A;  2E98 A;  5HXP A;  1JP3 A;  2VG1 A;  4H2O A;  4Q9O A;  2VG4 A;  3QAS A;  4U82 A;  5HXO A;  5HC7 A;  5CQB A;  3SGT A;  4CMX A;  3SGX A;  4CMV A;  2VG0 A;  3TH8 A;  4H8E A;  5CQJ A;  4CMW A;  3WQK A;  3WQM A;  5HXN A;  2VFW A;  3WQN A;  3WYJ A;  4H2J A;  1X06 A;  1F75 A; 
#chains in the Genus database with same CATH homology
 5KH5 A;  1UEH A;  2DTN A;  2VG2 A;  1V7U A;  2E9C A;  4H38 A;  4ONC A;  2E9D A;  1X09 A;  4H2M A;  4H3C A;  4H3A A;  5HC6 A;  3UGS A;  3WQL A;  2E99 A;  4KT8 A;  4Q9M A;  3WYI A;  5HXQ A;  5HXT A;  3SGV A;  1X07 A;  1X08 A;  2E9A A;  2VG3 A;  3SH0 A;  5KH2 A;  2D2R A;  5HC8 A;  5KH4 A;  2E98 A;  5HXP A;  1JP3 A;  2VG1 A;  4H2O A;  4Q9O A;  2VG4 A;  3QAS A;  4U82 A;  5HXO A;  5HC7 A;  5CQB A;  3SGT A;  4CMX A;  3SGX A;  4CMV A;  2VG0 A;  3TH8 A;  4H8E A;  5CQJ A;  4CMW A;  3WQK A;  3WQM A;  5HXN A;  2VFW A;  3WQN A;  3WYJ A;  4H2J A;  1X06 A;  1F75 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1X07A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations