1AGG | Genus

Total Genus 5

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	5
sequence length	48
structure length	48
Chain Sequence	EDNCIAEDYGKCTWGGTKCCRGRPCRCSMIGTNCECTPRLIMEGLSFA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 48 atoms

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48 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Neurotoxin
publication title	The solution structure of omega-Aga-IVB, a P-type calcium channel antagonist from venom of the funnel web spider, Agelenopsis aperta. pubmed doi rcsb
molecule keywords	OMEGA-AGATOXIN-IVB
total genus	5
structure length	48
sequence length	48
ec nomenclature
pdb deposition date	1995-11-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02819	Toxin_9	Spider toxin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.40.10	Few Secondary Structures	Irregular	Omega-AgatoxinV	Omega-AgatoxinV	1aggA00

1OAWA 1AGGA 1OAVA 1G9PA 2ROOA 1IVAA 1VTXA 1QDPA 1OMAA
chains in the Genus database with same CATH superfamily

1OAWA 2DCVA 1CIXA 1BOEA 1AGGA 1OAVA 1G9PA 2DCWA 2ROOA 1XI7A 1IVAA 1VTXA 1HY9A 1QDPA 1XJ1A 1H59B 1OMAA
chains in the Genus database with same CATH topology

1OAWA 2DCVA 1CIXA 1BOEA 1AGGA 1OAVA 1G9PA 2DCWA 2ROOA 1XI7A 1IVAA 1VTXA 1QDPA 1XJ1A 1H59B 1OMAA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1OAW A;  1AGG A;  1OAV A;  1G9P A;  2ROO A;  1IVA A;  1VTX A;  1QDP A;  1OMA A; 
#chains in the Genus database with same CATH topology
 1OAW A;  2DCV A;  1CIX A;  1BOE A;  1AGG A;  1OAV A;  1G9P A;  2DCW A;  2ROO A;  1XI7 A;  1IVA A;  1VTX A;  1HY9 A;  1QDP A;  1XJ1 A;  1H59 B;  1OMA A; 
#chains in the Genus database with same CATH homology
 1OAW A;  2DCV A;  1CIX A;  1BOE A;  1AGG A;  1OAV A;  1G9P A;  2DCW A;  2ROO A;  1XI7 A;  1IVA A;  1VTX A;  1QDP A;  1XJ1 A;  1H59 B;  1OMA A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1AGGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations