1AON | Genus

Total Genus 168

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	168
sequence length	524
structure length	524
Chain Sequence	AAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLP

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Complex (groel/groes)
source organism	Escherichia coli
publication title	The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex. pubmed doi rcsb
molecule keywords	GROEL
total genus	168
structure length	524
sequence length	524
chains with identical sequence	B, C, D, E, F, G, H, I, J, K, L, M, N
ec nomenclature
pdb deposition date	1997-07-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00118	Cpn60_TCP1	TCP-1/cpn60 chaperonin family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL; domain 1	GroEL-like equatorial domain	1aonA01
3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL; domain 2	TCP-1-like chaperonin intermediate domain	1aonA02
3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	1aonA03

3M6CA 3AQ1B 1KP8A 4XCIB 1SJPA 1JONA 1ASXA 3VZ8A 3RTKA 1SX4A 1XCKA 5CDKA 1ASSA 1Q2VA 1A6EB 1Q3QA 1PCQA 3RUQA 1SS8A 1LA1A 3VZ7A 3KFBA 4WGLA 1Q3SA 1A6EA 4XCGB 3WVLA 1E0RB 2NWCA 3KFEA 4PKOA 1DKDA 1DK7A 4XCGA 3VZ6A 3KTTB 1FYAA 1GMLA 4PJ1A 5CDJA 1A6DB 1OELA 2EU1A 3RUWA 3RUVA 4PKNA 1GN1A 3RUSA 1AONA 1PF9A 3KO1A 5CDIA 1GRLA 1FY9A 1A6DA 1KIDA 3OSXA 1MNFA 3E76A 1IOKA 4KI8A 4XCDA 1SRVA 4WSCA 1SX3A 1Q3RA 1SVTA 4HELA
chains in the Genus database with same CATH superfamily

3M6CA 3AQ1B 1KP8A 4XCIB 1SJPA 1JONA 1ASXA 3VZ8A 3RTKA 1SX4A 1XCKA 5CDKA 1ASSA 1Q2VA 1A6EB 1Q3QA 1PCQA 3RUQA 1SS8A 1LA1A 3VZ7A 3KFBA 4WGLA 1Q3SA 1A6EA 4XCGB 3WVLA 1E0RB 2NWCA 3KFEA 4PKOA 1DKDA 1DK7A 4XCGA 3VZ6A 3KTTB 1FYAA 1GMLA 4PJ1A 5CDJA 1A6DB 1OELA 2EU1A 3RUWA 3RUVA 4PKNA 1GN1A 3RUSA 1AONA 1PF9A 3KO1A 5CDIA 1GRLA 1FY9A 1A6DA 1KIDA 3OSXA 1MNFA 3E76A 1IOKA 4KI8A 4XCDA 1SRVA 4MO1A 4WSCA 1SX3A 1Q3RA 1SVTA 4HELA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3M6C A;  3AQ1 B;  1KP8 A;  4XCI B;  1SJP A;  1JON A;  1ASX A;  3VZ8 A;  3RTK A;  1SX4 A;  1XCK A;  5CDK A;  1ASS A;  1Q2V A;  1A6E B;  1Q3Q A;  1PCQ A;  3RUQ A;  1SS8 A;  1LA1 A;  3VZ7 A;  3KFB A;  4WGL A;  1Q3S A;  1A6E A;  4XCG B;  3WVL A;  1E0R B;  2NWC A;  3KFE A;  4PKO A;  1DKD A;  1DK7 A;  4XCG A;  3VZ6 A;  3KTT B;  1FYA A;  1GML A;  4PJ1 A;  5CDJ A;  1A6D B;  1OEL A;  2EU1 A;  3RUW A;  3RUV A;  4PKN A;  1GN1 A;  3RUS A;  1AON A;  1PF9 A;  3KO1 A;  5CDI A;  1GRL A;  1FY9 A;  1A6D A;  1KID A;  3OSX A;  1MNF A;  3E76 A;  1IOK A;  4KI8 A;  4XCD A;  1SRV A;  4WSC A;  1SX3 A;  1Q3R A;  1SVT A;  4HEL A; 
#chains in the Genus database with same CATH topology
 3M6C A;  3AQ1 B;  1KP8 A;  4XCI B;  1SJP A;  1JON A;  1ASX A;  3VZ8 A;  3RTK A;  1SX4 A;  1XCK A;  5CDK A;  1ASS A;  1Q2V A;  1A6E B;  1Q3Q A;  1PCQ A;  3RUQ A;  1SS8 A;  1LA1 A;  3VZ7 A;  3KFB A;  4WGL A;  1Q3S A;  1A6E A;  4XCG B;  3WVL A;  1E0R B;  2NWC A;  3KFE A;  4PKO A;  1DKD A;  1DK7 A;  4XCG A;  3VZ6 A;  3KTT B;  1FYA A;  1GML A;  4PJ1 A;  5CDJ A;  1A6D B;  1OEL A;  2EU1 A;  3RUW A;  3RUV A;  4PKN A;  1GN1 A;  3RUS A;  1AON A;  1PF9 A;  3KO1 A;  5CDI A;  1GRL A;  1FY9 A;  1A6D A;  1KID A;  3OSX A;  1MNF A;  3E76 A;  1IOK A;  4KI8 A;  4XCD A;  1SRV A;  4MO1 A;  4WSC A;  1SX3 A;  1Q3R A;  1SVT A;  4HEL A; 
#chains in the Genus database with same CATH homology
 3M6C A;  3AQ1 B;  1KP8 A;  4XCI B;  1SJP A;  1JON A;  1ASX A;  3VZ8 A;  3RTK A;  1SX4 A;  1XCK A;  5CDK A;  1ASS A;  1Q2V A;  1A6E B;  1Q3Q A;  1PCQ A;  3RUQ A;  1SS8 A;  1LA1 A;  3VZ7 A;  3KFB A;  4WGL A;  1Q3S A;  1A6E A;  4XCG B;  3WVL A;  1E0R B;  2NWC A;  3KFE A;  4PKO A;  1DKD A;  1DK7 A;  4XCG A;  3VZ6 A;  3KTT B;  1FYA A;  1GML A;  4PJ1 A;  5CDJ A;  1A6D B;  1OEL A;  2EU1 A;  3RUW A;  3RUV A;  4PKN A;  1GN1 A;  3RUS A;  1AON A;  1PF9 A;  3KO1 A;  5CDI A;  1GRL A;  1FY9 A;  1A6D A;  1KID A;  3OSX A;  1MNF A;  3E76 A;  1IOK A;  4KI8 A;  4XCD A;  1SRV A;  4WSC A;  1SX3 A;  1Q3R A;  1SVT A;  4HEL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1AONA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations