1EXE | Genus

Total Genus 18

Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	18
sequence length	99
structure length	99
Chain Sequence	MNKTELIKAIAQDTGLTQVSVSKMLASFEKIITETVAKGDKVQLTGFLNIKPVARQARKGFNPQTQEALEIAPSVGVSVKPGESLKKAAEGLKYEDFAK

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__4220097921134078__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__4220097921134078__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/1exe/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__4220097921134078__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"4220097921134078","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/1exe/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__4220097921134078__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Bacillus phage spo1
publication title	Solution structure of a mutant of transcription factor 1: implications for enhanced DNA binding. pubmed doi rcsb
molecule keywords	TRANSCRIPTION FACTOR 1
total genus	18
structure length	99
sequence length	99
chains with identical sequence	B
ec nomenclature
pdb deposition date	2000-05-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00216	Bac_DNA_binding	Bacterial DNA-binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.520.10	Few Secondary Structures	Irregular	HU Protein; Chain A	IHF-like DNA-binding proteins	1exeA00

1HUUA 3RHIA 4YFTC 4QJUA 4YEYA 4YF0A 1OUZB 2NP2A 1OWGA 1OWFA 1WTUA 1EXEA 4N1VA 1OWGB 1HUEA 1OWFB 4YEWA 4FMRA 2HT0A 1IHFA 4YFHA 4QJNA 2O97A 4PT4A 1P51A 2HT0B 1IHFB 5FBMA 2IIEA 1B8ZA 2O97B 4P3VA 5L8ZA 1P71A 2NDPA 4YEWC 4YFTA 1MULA 4DKYA 5EKAA 1P78A 4YEXA 1RIYA 2IIFA 1OUZA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1HUU A;  3RHI A;  4YFT C;  4QJU A;  4YEY A;  4YF0 A;  1OUZ B;  2NP2 A;  1OWG A;  1OWF A;  1WTU A;  1EXE A;  4N1V A;  1OWG B;  1HUE A;  1OWF B;  4YEW A;  4FMR A;  2HT0 A;  1IHF A;  4YFH A;  4QJN A;  2O97 A;  4PT4 A;  1P51 A;  2HT0 B;  1IHF B;  5FBM A;  2IIE A;  1B8Z A;  2O97 B;  4P3V A;  5L8Z A;  1P71 A;  2NDP A;  4YEW C;  4YFT A;  1MUL A;  4DKY A;  5EKA A;  1P78 A;  4YEX A;  1RIY A;  2IIF A;  1OUZ A; 
#chains in the Genus database with same CATH topology
 1HUU A;  3RHI A;  4YFT C;  4QJU A;  4YEY A;  4YF0 A;  1OUZ B;  2NP2 A;  1OWG A;  1OWF A;  1WTU A;  1EXE A;  4N1V A;  1OWG B;  1HUE A;  1OWF B;  4YEW A;  4FMR A;  2HT0 A;  1IHF A;  4YFH A;  4QJN A;  2O97 A;  4PT4 A;  1P51 A;  2HT0 B;  1IHF B;  5FBM A;  2IIE A;  1B8Z A;  2O97 B;  4P3V A;  5L8Z A;  1P71 A;  2NDP A;  4YEW C;  4YFT A;  1MUL A;  4DKY A;  5EKA A;  1P78 A;  4YEX A;  1RIY A;  2IIF A;  1OUZ A; 
#chains in the Genus database with same CATH homology
 1HUU A;  3RHI A;  4YFT C;  4QJU A;  4YEY A;  4YF0 A;  1OUZ B;  2NP2 A;  1OWG A;  1OWF A;  1WTU A;  1EXE A;  4N1V A;  1OWG B;  1HUE A;  1OWF B;  4YEW A;  4FMR A;  2HT0 A;  1IHF A;  4YFH A;  4QJN A;  2O97 A;  4PT4 A;  1P51 A;  2HT0 B;  1IHF B;  5FBM A;  2IIE A;  1B8Z A;  2O97 B;  4P3V A;  5L8Z A;  1P71 A;  2NDP A;  4YEW C;  4YFT A;  1MUL A;  4DKY A;  5EKA A;  1P78 A;  4YEX A;  1RIY A;  2IIF A;  1OUZ A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1EXEA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations