1HUEA

Histone-like protein
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
90
structure length
90
Chain Sequence
MNKTELINAVAETSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKGRNPQTGEEMEIPASKVPAFKPGKALKDAVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna-binding
molecule keywords HU PROTEIN
publication title Solution structure of the HU protein from Bacillus stearothermophilus.
pubmed doi rcsb
total genus 14
structure length 90
sequence length 90
chains with identical sequence B
ec nomenclature
pdb deposition date 1995-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00216 Bac_DNA_binding Bacterial DNA-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.520.10 Few Secondary Structures Irregular HU Protein; Chain A IHF-like DNA-binding proteins 1hueA00
2O97B 4YF0A 3RHIA 1OWGA 1P71A 1HUUA 2IIEA 1OWGB 1RIYA 1OWFA 1EXEA 4QJUA 1OWFB 1WTUA 4YEWC 2NDPA 4N1VA 4PT4A 4YEWA 1OUZA 1HUEA 1IHFA 1OUZB 1P78A 2NP2A 4DKYA 5L8ZA 1IHFB 1B8ZA 5FBMA 1MULA 4YEYA 4YFHA 4YEXA 4FMRA 4P3VA 5EKAA 4QJNA 4YFTC 2HT0A 2IIFA 1P51A 2HT0B 2O97A 4YFTA
chains in the Genus database with same CATH superfamily
2O97B 4YF0A 3RHIA 1OWGA 1P71A 1HUUA 2IIEA 1OWGB 1RIYA 1OWFA 1EXEA 4QJUA 1OWFB 1WTUA 4YEWC 2NDPA 4N1VA 4PT4A 4YEWA 1OUZA 1HUEA 1IHFA 1OUZB 1P78A 2NP2A 4DKYA 5L8ZA 1IHFB 1B8ZA 5FBMA 1MULA 4YEYA 4YFHA 4YEXA 4FMRA 4P3VA 5EKAA 4QJNA 4YFTC 2HT0A 2IIFA 1P51A 2HT0B 2O97A 4YFTA
chains in the Genus database with same CATH topology
2O97B 4YF0A 3RHIA 1OWGA 1P71A 1HUUA 2IIEA 1OWGB 1RIYA 1OWFA 1EXEA 4QJUA 1OWFB 1WTUA 4YEWC 2NDPA 4N1VA 4PT4A 4YEWA 1OUZA 1HUEA 1IHFA 1OUZB 1P78A 2NP2A 4DKYA 5L8ZA 1IHFB 1B8ZA 5FBMA 1MULA 4YEYA 4YFHA 4YEXA 4FMRA 4P3VA 5EKAA 4QJNA 4YFTC 2HT0A 2IIFA 1P51A 2HT0B 2O97A 4YFTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O97 B;  4YF0 A;  3RHI A;  1OWG A;  1P71 A;  1HUU A;  2IIE A;  1OWG B;  1RIY A;  1OWF A;  1EXE A;  4QJU A;  1OWF B;  1WTU A;  4YEW C;  2NDP A;  4N1V A;  4PT4 A;  4YEW A;  1OUZ A;  1HUE A;  1IHF A;  1OUZ B;  1P78 A;  2NP2 A;  4DKY A;  5L8Z A;  1IHF B;  1B8Z A;  5FBM A;  1MUL A;  4YEY A;  4YFH A;  4YEX A;  4FMR A;  4P3V A;  5EKA A;  4QJN A;  4YFT C;  2HT0 A;  2IIF A;  1P51 A;  2HT0 B;  2O97 A;  4YFT A; 
#chains in the Genus database with same CATH topology
 2O97 B;  4YF0 A;  3RHI A;  1OWG A;  1P71 A;  1HUU A;  2IIE A;  1OWG B;  1RIY A;  1OWF A;  1EXE A;  4QJU A;  1OWF B;  1WTU A;  4YEW C;  2NDP A;  4N1V A;  4PT4 A;  4YEW A;  1OUZ A;  1HUE A;  1IHF A;  1OUZ B;  1P78 A;  2NP2 A;  4DKY A;  5L8Z A;  1IHF B;  1B8Z A;  5FBM A;  1MUL A;  4YEY A;  4YFH A;  4YEX A;  4FMR A;  4P3V A;  5EKA A;  4QJN A;  4YFT C;  2HT0 A;  2IIF A;  1P51 A;  2HT0 B;  2O97 A;  4YFT A; 
#chains in the Genus database with same CATH homology
 2O97 B;  4YF0 A;  3RHI A;  1OWG A;  1P71 A;  1HUU A;  2IIE A;  1OWG B;  1RIY A;  1OWF A;  1EXE A;  4QJU A;  1OWF B;  1WTU A;  4YEW C;  2NDP A;  4N1V A;  4PT4 A;  4YEW A;  1OUZ A;  1HUE A;  1IHF A;  1OUZ B;  1P78 A;  2NP2 A;  4DKY A;  5L8Z A;  1IHF B;  1B8Z A;  5FBM A;  1MUL A;  4YEY A;  4YFH A;  4YEX A;  4FMR A;  4P3V A;  5EKA A;  4QJN A;  4YFT C;  2HT0 A;  2IIF A;  1P51 A;  2HT0 B;  2O97 A;  4YFT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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