1K6NH

E(l212)a,d(l213)a double mutant structure of photosynthetic reaction center from rhodobacter sphaeroides
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
240
structure length
240
Chain Sequence
DLASLAIYSFWIFLAGLIYYLQTENMREGYPLENEDGTPAANQGPFPLPKPKTFILPHGRGTLTVPGPESEDRPIALARTAVSEGFPHAPTGDPMKDGVGPASWVARRDLPELDGHGHNKIKPMKAAAGFHVSAGKNPIGLPVRGCDLEIAGKVVDIWVDIPEQMARFLEVELKDGSTRLLPMQMVKVQSNRVHVNALSSDLFAGIPTIKSPTEVTLLEEDKICGYVAGGLMYAAPKRKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title The structure of a mutant photosynthetic reaction center shows unexpected changes in main chain orientations and quinone position.
pubmed doi rcsb
molecule tags Photosynthesis
source organism Rhodobacter sphaeroides
molecule keywords PHOTOSYNTHETIC REACTION CENTER L SUBUNIT
total genus 56
structure length 240
sequence length 240
ec nomenclature
pdb deposition date 2001-10-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF03967 PRCH Photosynthetic reaction centre, H-chain N-terminal region
H PF05239 PRC PRC-barrel domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.50.10 Alpha Beta Alpha-Beta Complex Photosynthetic Reaction Center; Chain H, domain 2 Photosynthetic Reaction Center, subunit H, domain 2 1k6nH02
4.10.540.10 Few Secondary Structures Irregular Photosynthetic Reaction Center; Chain H, domain 1 Photosynthetic reaction centre, H subunit, N-terminal domain 1k6nH01
2BNSC 1RVJH 2GMRH 2RCRH 1E6DH 2X5UH 4IN6H 4HBHH 1M3XH 4TQQH 2J8DH 5LRIH 3DTAH 3PRCH 1RGNH 2GNUH 3WMMH 1JGXH 2UWUH 2HG9H 2WX5H 1AIGH 3DU2H 2PRCH 2UWTH 1FNQH 2BOZH 1DS8H 1JH0H 3V3ZH 4N7KH 1RZHH 2UWWH 3DTSH 3G7FH 3T6DH 2UXKH 4LWYH 1FNPH 1JGWH 4IN5H 2HITH 2UX4H 2UX5H 3T6EH 1PRCH 4HBJH 3DU3H 1E14H 1PCRH 1YF6H 1K6LH 3V3YH 2UWSH 1VRNH 2UXJH 2UXMH 2JBLH 1PSTH 2I5NH 4N7LH 1YSTH 3ZUMH 1EYSH 1L9BH 1S00H 2UXLH 3ZUWH 4CASD 2BNPC 1RY5H 2UWVH 4H9LH 4H99H 1UMXH 5LSEH 7PRCH 3D38H 1MPSH 2WJMH 1PSSH 1QOVH 4RCRH 1L9JH 1RG5H 4IN7H 5PRCH 1RZZH 2JIYH 3DSYH 1DV6H 2HG3H 2HJ6H 1RQKH 2WJNH 3DUQH 1F6NH 1R2CH 3DTRH 2UX3H 2HHKH 2JJ0H 2J8CH 6PRCH 1JGZH 1OGVH 1AIJH 1DV3H 1K6NH 2X5VH 3I4DH 1JGYH 1DXRH 1KBYH 2HH1H
chains in the Genus database with same CATH superfamily
2BNSC 1RVJH 2GMRH 2RCRH 1E6DH 2X5UH 4IN6H 4HBHH 1M3XH 4TQQH 2J8DH 5LRIH 3DTAH 3PRCH 1RGNH 2GNUH 3WMMH 1JGXH 2UWUH 2HG9H 2WX5H 1AIGH 3DU2H 2PRCH 2UWTH 1FNQH 2BOZH 1DS8H 1JH0H 3V3ZH 4N7KH 1RZHH 2UWWH 3DTSH 3G7FH 3T6DH 2UXKH 4LWYH 1FNPH 1JGWH 4IN5H 2HITH 2UX4H 2UX5H 3T6EH 1PRCH 4HBJH 3DU3H 1E14H 1PCRH 1YF6H 1K6LH 3V3YH 2UWSH 1VRNH 2UXJH 2UXMH 2JBLH 1PSTH 2I5NH 4N7LH 1YSTH 3ZUMH 1EYSH 1L9BH 1S00H 2UXLH 3ZUWH 4CASD 2BNPC 1RY5H 2UWVH 4H9LH 4H99H 1UMXH 5LSEH 7PRCH 3D38H 1MPSH 2WJMH 1PSSH 1QOVH 4RCRH 1L9JH 1RG5H 4IN7H 5PRCH 1RZZH 2JIYH 3DSYH 1DV6H 2HG3H 2HJ6H 1RQKH 2WJNH 3DUQH 1F6NH 1R2CH 3DTRH 2UX3H 2HHKH 2JJ0H 2J8CH 6PRCH 1JGZH 1OGVH 1AIJH 1DV3H 1K6NH 2X5VH 3I4DH 1JGYH 1DXRH 1KBYH 2HH1H
chains in the Genus database with same CATH topology
2BNSC 1RVJH 2GMRH 2RCRH 1E6DH 2X5UH 4IN6H 4HBHH 1M3XH 4TQQH 2J8DH 5LRIH 3DTAH 3PRCH 1RGNH 2GNUH 3WMMH 1JGXH 2UWUH 2HG9H 2WX5H 1AIGH 3DU2H 2PRCH 2UWTH 1FNQH 2BOZH 1DS8H 1JH0H 3V3ZH 4N7KH 1RZHH 2UWWH 3DTSH 3G7FH 3T6DH 2UXKH 4LWYH 1FNPH 1JGWH 4IN5H 2HITH 2UX4H 2UX5H 3T6EH 1PRCH 4HBJH 3DU3H 1E14H 1PCRH 1YF6H 1K6LH 3V3YH 2UWSH 1VRNH 2UXJH 2UXMH 2JBLH 1PSTH 2I5NH 4N7LH 1YSTH 3ZUMH 1EYSH 1L9BH 1S00H 2UXLH 3ZUWH 4CASD 2BNPC 1RY5H 2UWVH 4H9LH 4H99H 1UMXH 5LSEH 7PRCH 3D38H 1MPSH 2WJMH 1PSSH 1QOVH 4RCRH 1L9JH 1RG5H 4IN7H 5PRCH 1RZZH 2JIYH 3DSYH 1DV6H 2HG3H 2HJ6H 1RQKH 2WJNH 3DUQH 1F6NH 1R2CH 3DTRH 2UX3H 2HHKH 2JJ0H 2J8CH 6PRCH 1JGZH 1OGVH 1AIJH 1DV3H 1K6NH 2X5VH 3I4DH 1JGYH 1DXRH 1KBYH 2HH1H
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2BNS C;  1RVJ H;  2GMR H;  2RCR H;  1E6D H;  2X5U H;  4IN6 H;  4HBH H;  1M3X H;  4TQQ H;  2J8D H;  5LRI H;  3DTA H;  3PRC H;  1RGN H;  2GNU H;  3WMM H;  1JGX H;  2UWU H;  2HG9 H;  2WX5 H;  1AIG H;  3DU2 H;  2PRC H;  2UWT H;  1FNQ H;  2BOZ H;  1DS8 H;  1JH0 H;  3V3Z H;  4N7K H;  1RZH H;  2UWW H;  3DTS H;  3G7F H;  3T6D H;  2UXK H;  4LWY H;  1FNP H;  1JGW H;  4IN5 H;  2HIT H;  2UX4 H;  2UX5 H;  3T6E H;  1PRC H;  4HBJ H;  3DU3 H;  1E14 H;  1PCR H;  1YF6 H;  1K6L H;  3V3Y H;  2UWS H;  1VRN H;  2UXJ H;  2UXM H;  2JBL H;  1PST H;  2I5N H;  4N7L H;  1YST H;  3ZUM H;  1EYS H;  1L9B H;  1S00 H;  2UXL H;  3ZUW H;  4CAS D;  2BNP C;  1RY5 H;  2UWV H;  4H9L H;  4H99 H;  1UMX H;  5LSE H;  7PRC H;  3D38 H;  1MPS H;  2WJM H;  1PSS H;  1QOV H;  4RCR H;  1L9J H;  1RG5 H;  4IN7 H;  5PRC H;  1RZZ H;  2JIY H;  3DSY H;  1DV6 H;  2HG3 H;  2HJ6 H;  1RQK H;  2WJN H;  3DUQ H;  1F6N H;  1R2C H;  3DTR H;  2UX3 H;  2HHK H;  2JJ0 H;  2J8C H;  6PRC H;  1JGZ H;  1OGV H;  1AIJ H;  1DV3 H;  1K6N H;  2X5V H;  3I4D H;  1JGY H;  1DXR H;  1KBY H;  2HH1 H; 
#chains in the Genus database with same CATH topology
 2BNS C;  1RVJ H;  2GMR H;  2RCR H;  1E6D H;  2X5U H;  4IN6 H;  4HBH H;  1M3X H;  4TQQ H;  2J8D H;  5LRI H;  3DTA H;  3PRC H;  1RGN H;  2GNU H;  3WMM H;  1JGX H;  2UWU H;  2HG9 H;  2WX5 H;  1AIG H;  3DU2 H;  2PRC H;  2UWT H;  1FNQ H;  2BOZ H;  1DS8 H;  1JH0 H;  3V3Z H;  4N7K H;  1RZH H;  2UWW H;  3DTS H;  3G7F H;  3T6D H;  2UXK H;  4LWY H;  1FNP H;  1JGW H;  4IN5 H;  2HIT H;  2UX4 H;  2UX5 H;  3T6E H;  1PRC H;  4HBJ H;  3DU3 H;  1E14 H;  1PCR H;  1YF6 H;  1K6L H;  3V3Y H;  2UWS H;  1VRN H;  2UXJ H;  2UXM H;  2JBL H;  1PST H;  2I5N H;  4N7L H;  1YST H;  3ZUM H;  1EYS H;  1L9B H;  1S00 H;  2UXL H;  3ZUW H;  4CAS D;  2BNP C;  1RY5 H;  2UWV H;  4H9L H;  4H99 H;  1UMX H;  5LSE H;  7PRC H;  3D38 H;  1MPS H;  2WJM H;  1PSS H;  1QOV H;  4RCR H;  1L9J H;  1RG5 H;  4IN7 H;  5PRC H;  1RZZ H;  2JIY H;  3DSY H;  1DV6 H;  2HG3 H;  2HJ6 H;  1RQK H;  2WJN H;  3DUQ H;  1F6N H;  1R2C H;  3DTR H;  2UX3 H;  2HHK H;  2JJ0 H;  2J8C H;  6PRC H;  1JGZ H;  1OGV H;  1AIJ H;  1DV3 H;  1K6N H;  2X5V H;  3I4D H;  1JGY H;  1DXR H;  1KBY H;  2HH1 H; 
#chains in the Genus database with same CATH homology
 2BNS C;  1RVJ H;  2GMR H;  2RCR H;  1E6D H;  2X5U H;  4IN6 H;  4HBH H;  1M3X H;  4TQQ H;  2J8D H;  5LRI H;  3DTA H;  3PRC H;  1RGN H;  2GNU H;  3WMM H;  1JGX H;  2UWU H;  2HG9 H;  2WX5 H;  1AIG H;  3DU2 H;  2PRC H;  2UWT H;  1FNQ H;  2BOZ H;  1DS8 H;  1JH0 H;  3V3Z H;  4N7K H;  1RZH H;  2UWW H;  3DTS H;  3G7F H;  3T6D H;  2UXK H;  4LWY H;  1FNP H;  1JGW H;  4IN5 H;  2HIT H;  2UX4 H;  2UX5 H;  3T6E H;  1PRC H;  4HBJ H;  3DU3 H;  1E14 H;  1PCR H;  1YF6 H;  1K6L H;  3V3Y H;  2UWS H;  1VRN H;  2UXJ H;  2UXM H;  2JBL H;  1PST H;  2I5N H;  4N7L H;  1YST H;  3ZUM H;  1EYS H;  1L9B H;  1S00 H;  2UXL H;  3ZUW H;  4CAS D;  2BNP C;  1RY5 H;  2UWV H;  4H9L H;  4H99 H;  1UMX H;  5LSE H;  7PRC H;  3D38 H;  1MPS H;  2WJM H;  1PSS H;  1QOV H;  4RCR H;  1L9J H;  1RG5 H;  4IN7 H;  5PRC H;  1RZZ H;  2JIY H;  3DSY H;  1DV6 H;  2HG3 H;  2HJ6 H;  1RQK H;  2WJN H;  3DUQ H;  1F6N H;  1R2C H;  3DTR H;  2UX3 H;  2HHK H;  2JJ0 H;  2J8C H;  6PRC H;  1JGZ H;  1OGV H;  1AIJ H;  1DV3 H;  1K6N H;  2X5V H;  3I4D H;  1JGY H;  1DXR H;  1KBY H;  2HH1 H;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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