1K8H | Genus

Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	17
sequence length	133
structure length	133
Chain Sequence	GKSDKIIPIAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAPYKHATIENHDPLRKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWKNNKVKVLIALAKGKKLYDR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 133 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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133 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Rna binding protein
source organism	Aquifex aeolicus
publication title	Structure of small protein B: the protein component of the tmRNA-SmpB system for ribosome rescue. pubmed doi rcsb
molecule keywords	Small protein B
total genus	17
structure length	133
sequence length	133
ec nomenclature
pdb deposition date	2001-10-24

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.280.10	Mainly Beta	Beta Barrel	Small Protein B; Chain: A;	Small Protein B; Chain: A;	1k8hA00

2CZJA 1J1HA 1K8HA 1P6VA 1WJXA
chains in the Genus database with same CATH superfamily

2CZJA 1J1HA 1K8HA 1P6VA 1WJXA
chains in the Genus database with same CATH topology

2CZJA 1J1HA 1K8HA 1P6VA 1WJXA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2CZJ A;  1J1H A;  1K8H A;  1P6V A;  1WJX A; 
#chains in the Genus database with same CATH topology
 2CZJ A;  1J1H A;  1K8H A;  1P6V A;  1WJX A; 
#chains in the Genus database with same CATH homology
 2CZJ A;  1J1H A;  1K8H A;  1P6V A;  1WJX A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1K8HA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN