The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
134
|
sequence length |
340
|
structure length |
340
|
Chain Sequence |
AYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRAYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The Crystal Structure of an Azide Complex of the Diferrous R2 Subunit of Ribonucleotide Reductase Displays a Novel Carboxylate Shift with Important Mechanistic Implications for Diiron-Catalyzed Oxygen Activation
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| source organism |
Escherichia coli
|
| molecule keywords |
Ribonucleoside-diphosphate reductase 1 beta chain
|
| total genus |
134
|
| structure length |
340
|
| sequence length |
340
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
1.17.4.1: Ribonucleoside-diphosphate reductase. |
| pdb deposition date | 2003-12-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00268 | Ribonuc_red_sm | Ribonucleotide reductase, small chain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Ribonucleotide Reductase, subunit A | Ribonucleotide Reductase, subunit A |
#chains in the Genus database with same CATH superfamily 3RNC A; 2UW2 A; 1PIZ A; 3RNB A; 4M1F A; 4XB9 A; 3HF1 A; 2RCC A; 3RI7 B; 2IND A; 1RSR A; 3MJO A; 1PJ0 A; 1PIY A; 1OQ9 A; 3DHG A; 1FZI A; 1XVC A; 1XVG A; 3DHH A; 3I5J A; 4M1I A; 3U52 A; 1FZH A; 1SMQ A; 1FZ1 A; 2INP C; 3RNF B; 3OLJ A; 1SYY A; 2XOF A; 3DHZ A; 4BMU A; 1FZ4 C; 1FZ8 A; 2ALX A; 2JCD A; 3GE8 A; 1MTY D; 3Q3N B; 3DHI B; 5CI3 A; 5CI0 A; 1AV8 A; 3RI7 A; 1FZ5 C; 3CHI A; 4ERM E; 1XMG A; 1XVF C; 1FZ2 C; 1FZ4 A; 4V0J A; 4XBV A; 4M1H A; 1AFR A; 1JK0 B; 5HYG A; 1KGN A; 3RMK B; 1JQC A; 1RSV A; 1FZ6 A; 4BMP A; 1XU5 A; 1XVF A; 1BIQ B; 1FZI C; 1XVC C; 1XVG C; 3GE8 B; 3RNG A; 5CNS E; 3U52 C; 1FZH C; 4D8F A; 3Q3N A; 2J2F A; 1FZ1 C; 3DHI A; 1MMO B; 4BMQ A; 1FZ7 A; 1H0N A; 1FZ8 C; 1MMO D; 1FYZ C; 2ANI A; 2RDB B; 1MHZ B; 3PER A; 4D8G A; 3Q3M B; 1JK0 A; 1MHZ D; 1XMH C; 1RNR A; 1ZA0 A; 3CHT A; 3N1Y A; 3RMK A; 4GAM B; 1XMG C; 1FYZ A; 1MTY B; 1T0R A; 5CI1 A; 1BIQ A; 3RNG B; 1OQU A; 1XU3 A; 3N37 A; 1XMH A; 3RNE B; 3Q14 B; 1PIU A; 3RNA B; 1FZ6 C; 1FZ9 C; 1XVD A; 3N20 B; 1MHY D; 1PIM A; 1UZR A; 1XU5 C; 1KGP A; 2XZ1 A; 2RDB A; 5CI4 A; 5CNT E; 3N1Y B; 3Q3M A; 1OQB A; 2O1Z A; 4BMR A; 1FZ3 C; 1FZ7 C; 3CHH A; 1FZ9 A; 3PF7 A; 4GAM A; 4P1C B; 1XIK A; 1T0R B; 2R2F A; 3N1Z B; 1PFR A; 2INN A; 3RNE A; 5CI2 A; 3Q14 A; 4DR0 A; 1T0S A; 1SMS A; 2AV8 A; 1FZ3 A; 1W68 A; 5CNU E; 2UW1 B; 3N20 A; 1T0Q A; 3RNA A; 4P1B B; 1XU3 C; 1OQ7 A; 1XMF C; 1RIB A; 1XVD C; 4BMO A; 4P1C A; 3RN9 B; 2XZ0 A; 3VPM A; 5CNV E; 3N1Z A; 4HR5 A; 1FZ0 A; 1R65 A; 1MXR A; 1T0S B; 1MHY B; 1XMF A; 3CHU A; 4AC8 A; 3N1X A; 5DCS A; 1T0Q B; 3N39 A; 3VPN A; 5EKB A; 2UW1 A; 4XBW A; 5DCR A; 1W69 A; 4P1B A; 3Q3O B; 2INN C; 1XVB A; 4HR0 A; 3I63 B; 3GE3 B; 3RN9 A; 3EE4 A; 1OQ4 A; 3VPO A; 1JPR A; 2INC B; 1PM2 A; 2P1I A; 2VUX A; 3Q2A A; 3N1X B; 5DCO A; 3RNC B; 1FZ0 C; 3RNB B; 4DJN A; 3Q3O A; 1YFD A; 4HR4 A; 4BMT A; 1XVE C; 2IND B; 1KGO A; 2INP A; 3N38 A; 1R2F A; 3I63 A; 4N83 A; 3GE3 A; 1PJ1 A; 1XVB C; 3DHG B; 3DHH B; 3I5J B; 2INC A; 3Q2A B; 3N3A A; 5HYH A; 1XVE A; 3N3B A; 1H0O A; 1FZ5 A; 3RNF A; 1MRR A; 1XSM A; 3Q1G A; 2BQ1 I; 3PM5 A; 1FZ2 A; #chains in the Genus database with same CATH topology 3RNC A; 2UW2 A; 1PIZ A; 3RNB A; 4M1F A; 4XB9 A; 3HF1 A; 2RCC A; 3RI7 B; 2IND A; 1RSR A; 3MJO A; 1PJ0 A; 1PIY A; 1OQ9 A; 3DHG A; 1FZI A; 1XVC A; 1XVG A; 3DHH A; 3I5J A; 4M1I A; 3U52 A; 1FZH A; 1SMQ A; 1FZ1 A; 2INP C; 3RNF B; 3OLJ A; 1SYY A; 2XOF A; 3DHZ A; 4BMU A; 1FZ4 C; 1FZ8 A; 2ALX A; 2JCD A; 3GE8 A; 1MTY D; 3Q3N B; 3DHI B; 5CI3 A; 5CI0 A; 1AV8 A; 3RI7 A; 1FZ5 C; 3CHI A; 4ERM E; 1XMG A; 1XVF C; 1FZ2 C; 1FZ4 A; 4V0J A; 4XBV A; 4M1H A; 1AFR A; 1JK0 B; 5HYG A; 1KGN A; 3RMK B; 1JQC A; 1RSV A; 1FZ6 A; 4BMP A; 1XU5 A; 1XVF A; 1BIQ B; 1FZI C; 1XVC C; 1XVG C; 3GE8 B; 3RNG A; 5CNS E; 3U52 C; 1FZH C; 4D8F A; 3Q3N A; 2J2F A; 1FZ1 C; 3DHI A; 1MMO B; 4BMQ A; 1FZ7 A; 1H0N A; 1FZ8 C; 1MMO D; 1FYZ C; 2ANI A; 2RDB B; 1MHZ B; 3PER A; 4D8G A; 3Q3M B; 1JK0 A; 1MHZ D; 1XMH C; 1RNR A; 1ZA0 A; 3CHT A; 3N1Y A; 3RMK A; 4GAM B; 1XMG C; 1FYZ A; 1MTY B; 1T0R A; 5CI1 A; 1BIQ A; 3RNG B; 1OQU A; 1XU3 A; 3N37 A; 1XMH A; 3RNE B; 3Q14 B; 1PIU A; 3RNA B; 1FZ6 C; 1FZ9 C; 1XVD A; 3N20 B; 1MHY D; 1PIM A; 1UZR A; 1XU5 C; 1KGP A; 2XZ1 A; 2RDB A; 5CI4 A; 5CNT E; 3N1Y B; 3Q3M A; 1OQB A; 2O1Z A; 4BMR A; 1FZ3 C; 1FZ7 C; 3CHH A; 1FZ9 A; 3PF7 A; 4GAM A; 4P1C B; 1XIK A; 1T0R B; 2R2F A; 3N1Z B; 1PFR A; 2INN A; 3RNE A; 5CI2 A; 3Q14 A; 4DR0 A; 1T0S A; 1SMS A; 2AV8 A; 1FZ3 A; 1W68 A; 5CNU E; 2UW1 B; 3N20 A; 1T0Q A; 3RNA A; 4P1B B; 1XU3 C; 1OQ7 A; 1XMF C; 1RIB A; 1XVD C; 4BMO A; 4P1C A; 3RN9 B; 2XZ0 A; 3VPM A; 5CNV E; 3N1Z A; 4HR5 A; 1FZ0 A; 1R65 A; 1MXR A; 1T0S B; 1MHY B; 1XMF A; 3CHU A; 4AC8 A; 3N1X A; 5DCS A; 1T0Q B; 3N39 A; 3VPN A; 5EKB A; 2UW1 A; 4XBW A; 5DCR A; 1W69 A; 4P1B A; 3Q3O B; 2INN C; 1XVB A; 4HR0 A; 3I63 B; 3GE3 B; 3RN9 A; 3EE4 A; 1OQ4 A; 3VPO A; 1JPR A; 2INC B; 1PM2 A; 2P1I A; 2VUX A; 3Q2A A; 3N1X B; 5DCO A; 3RNC B; 1FZ0 C; 3RNB B; 4DJN A; 3Q3O A; 1YFD A; 4HR4 A; 4BMT A; 1XVE C; 2IND B; 1KGO A; 2INP A; 3N38 A; 1R2F A; 3I63 A; 4N83 A; 3GE3 A; 1PJ1 A; 1XVB C; 3DHG B; 3DHH B; 3I5J B; 2INC A; 3Q2A B; 3N3A A; 5HYH A; 1XVE A; 3N3B A; 1H0O A; 1FZ5 A; 3RNF A; 1MRR A; 1XSM A; 3Q1G A; 2BQ1 I; 3PM5 A; 1FZ2 A; #chains in the Genus database with same CATH homology 3RNC A; 2UW2 A; 1PIZ A; 3RNB A; 4M1F A; 4XB9 A; 3HF1 A; 2RCC A; 3RI7 B; 2IND A; 1RSR A; 3MJO A; 1PJ0 A; 1PIY A; 1OQ9 A; 3DHG A; 1FZI A; 1XVC A; 1XVG A; 3DHH A; 3I5J A; 4M1I A; 3U52 A; 1FZH A; 1SMQ A; 1FZ1 A; 2INP C; 3RNF B; 3OLJ A; 1SYY A; 2XOF A; 3DHZ A; 4BMU A; 1FZ4 C; 1FZ8 A; 2ALX A; 2JCD A; 3GE8 A; 1MTY D; 3Q3N B; 3DHI B; 5CI3 A; 5CI0 A; 1AV8 A; 3RI7 A; 1FZ5 C; 3CHI A; 4ERM E; 1XMG A; 1XVF C; 1FZ2 C; 1FZ4 A; 4V0J A; 4XBV A; 4M1H A; 1AFR A; 1JK0 B; 5HYG A; 1KGN A; 3RMK B; 1JQC A; 1RSV A; 1FZ6 A; 4BMP A; 1XU5 A; 1XVF A; 1BIQ B; 1FZI C; 1XVC C; 1XVG C; 3GE8 B; 3RNG A; 5CNS E; 3U52 C; 1FZH C; 4D8F A; 3Q3N A; 2J2F A; 1FZ1 C; 3DHI A; 1MMO B; 4BMQ A; 1FZ7 A; 1H0N A; 1FZ8 C; 1MMO D; 1FYZ C; 2ANI A; 2RDB B; 1MHZ B; 3PER A; 4D8G A; 3Q3M B; 1JK0 A; 1MHZ D; 1XMH C; 1RNR A; 1ZA0 A; 3CHT A; 3N1Y A; 3RMK A; 4GAM B; 1XMG C; 1FYZ A; 1MTY B; 1T0R A; 5CI1 A; 1BIQ A; 3RNG B; 1OQU A; 1XU3 A; 3N37 A; 1XMH A; 3RNE B; 3Q14 B; 1PIU A; 3RNA B; 1FZ6 C; 1FZ9 C; 1XVD A; 3N20 B; 1MHY D; 1PIM A; 1UZR A; 1XU5 C; 1KGP A; 2XZ1 A; 2RDB A; 5CI4 A; 5CNT E; 3N1Y B; 3Q3M A; 1OQB A; 2O1Z A; 4BMR A; 1FZ3 C; 1FZ7 C; 3CHH A; 1FZ9 A; 3PF7 A; 4GAM A; 4P1C B; 1XIK A; 1T0R B; 2R2F A; 3N1Z B; 1PFR A; 2INN A; 3RNE A; 5CI2 A; 3Q14 A; 4DR0 A; 1T0S A; 1SMS A; 2AV8 A; 1FZ3 A; 1W68 A; 5CNU E; 2UW1 B; 3N20 A; 1T0Q A; 3RNA A; 4P1B B; 1XU3 C; 1OQ7 A; 1XMF C; 1RIB A; 1XVD C; 4BMO A; 4P1C A; 3RN9 B; 2XZ0 A; 3VPM A; 5CNV E; 3N1Z A; 4HR5 A; 1FZ0 A; 1R65 A; 1MXR A; 1T0S B; 1MHY B; 1XMF A; 3CHU A; 4AC8 A; 3N1X A; 5DCS A; 1T0Q B; 3N39 A; 3VPN A; 5EKB A; 2UW1 A; 4XBW A; 5DCR A; 1W69 A; 4P1B A; 3Q3O B; 2INN C; 1XVB A; 4HR0 A; 3I63 B; 3GE3 B; 3RN9 A; 3EE4 A; 1OQ4 A; 3VPO A; 1JPR A; 2INC B; 1PM2 A; 2P1I A; 2VUX A; 3Q2A A; 3N1X B; 5DCO A; 3RNC B; 1FZ0 C; 3RNB B; 4DJN A; 3Q3O A; 1YFD A; 4HR4 A; 4BMT A; 1XVE C; 2IND B; 1KGO A; 2INP A; 3N38 A; 1R2F A; 3I63 A; 4N83 A; 3GE3 A; 1PJ1 A; 1XVB C; 3DHG B; 3DHH B; 3I5J B; 2INC A; 3Q2A B; 3N3A A; 5HYH A; 1XVE A; 3N3B A; 1H0O A; 1FZ5 A; 3RNF A; 1MRR A; 1XSM A; 3Q1G A; 2BQ1 I; 3PM5 A; 1FZ2 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
