The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
23
|
sequence length |
123
|
structure length |
123
|
Chain Sequence |
MTLKQVIVVRDDLKLSRGKLAVQVAHAAIIGYLKSDSSLRRKWLDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGLVQDAGLTEVPPGTITAVVIGPDEERKIDKVTGNLPLLKLEHHHHHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Structural genomics, unknown function
|
| molecule keywords |
Protein AF2095(GR4)
|
| publication title |
Solution structure of Archaeglobus fulgidis peptidyl-tRNA hydrolase (Pth2) provides evidence for an extensive conserved family of Pth2 enzymes in archea, bacteria, and eukaryotes
pubmed doi rcsb |
| source organism |
Archaeoglobus fulgidus
|
| total genus |
23
|
| structure length |
123
|
| sequence length |
123
|
| ec nomenclature |
ec
3.1.1.29: Aminoacyl-tRNA hydrolase. |
| pdb deposition date | 2003-12-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01981 | PTH2 | Peptidyl-tRNA hydrolase PTH2 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Bit1 | Bit1 |
#chains in the Genus database with same CATH superfamily 1XTY A; 1Q7S A; 1WN2 A; 3ERJ A; 2ZV3 A; 2GAX A; 1RLK A; 1RZW A; 2D3K A; #chains in the Genus database with same CATH topology 1XTY A; 1Q7S A; 1WN2 A; 3ERJ A; 2ZV3 A; 2GAX A; 1RLK A; 1RZW A; 2D3K A; #chains in the Genus database with same CATH homology 1XTY A; 1Q7S A; 1WN2 A; 3ERJ A; 2ZV3 A; 2GAX A; 1RLK A; 1RZW A; 2D3K A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
