The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively. For RNA structures we plot several genus traces for various types of base pairs, as explained here.
Total Genus |
1
|
sequence length |
49
|
structure length |
49
|
Chain Sequence |
GGGAGUGAAGGAGGCUCGCGAACUCGCGAAGCCGAGAAACUUCACUCCC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transcription/rna
|
| molecule keywords |
49 NT FRAGMENT OF MRNA FOR L1
|
| publication title |
Ribosomal protein L1 recognizes the same specific structural motif in its target sites on the autoregulatory mRNA and 23S rRNA.
pubmed doi rcsb |
| source organism |
Methanocaldococcus jannaschii
|
| total genus |
1
|
| structure length |
49
|
| sequence length |
49
|
| RNA BGSU Site |
RNA BGSU Site Entry
|
| chains with identical sequence |
D
|
| ec nomenclature | |
| pdb deposition date | 2004-07-29 |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
