1XTYA

Crystal structure of sulfolobus solfataricus peptidyl-trna hydrolase
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
120
structure length
120
Chain Sequence
MIKMVIVVRSDIKMGKGKIAAQVAHAAVTLVVSIINSNNLRWKEWLNEWLHQGQPKIIVKVNSLDEIISRAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITGDLKLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Peptidyl-tRNA hydrolase
publication title Crystal structure at 1.8 A resolution and identification of active site residues of Sulfolobus solfataricus peptidyl-tRNA hydrolase.
pubmed doi rcsb
source organism Sulfolobus solfataricus
total genus 40
structure length 120
sequence length 120
chains with identical sequence B, C, D
ec nomenclature ec 3.1.1.29: Aminoacyl-tRNA hydrolase.
pdb deposition date 2004-10-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01981 PTH2 Peptidyl-tRNA hydrolase PTH2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1490.10 Alpha Beta 3-Layer(aba) Sandwich Bit1 Bit1 1xtyA00
1RZWA 2GAXA 2ZV3A 1RLKA 2D3KA 3ERJA 1XTYA 1Q7SA 1WN2A
chains in the Genus database with same CATH superfamily
1RZWA 2GAXA 2ZV3A 1RLKA 2D3KA 3ERJA 1XTYA 1Q7SA 1WN2A
chains in the Genus database with same CATH topology
1RZWA 2GAXA 2ZV3A 1RLKA 2D3KA 3ERJA 1XTYA 1Q7SA 1WN2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RZW A;  2GAX A;  2ZV3 A;  1RLK A;  2D3K A;  3ERJ A;  1XTY A;  1Q7S A;  1WN2 A; 
#chains in the Genus database with same CATH topology
 1RZW A;  2GAX A;  2ZV3 A;  1RLK A;  2D3K A;  3ERJ A;  1XTY A;  1Q7S A;  1WN2 A; 
#chains in the Genus database with same CATH homology
 1RZW A;  2GAX A;  2ZV3 A;  1RLK A;  2D3K A;  3ERJ A;  1XTY A;  1Q7S A;  1WN2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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