255DA

Crystal structure of an rna double helix incorporating a track of non-watson-crick base pairs
Total Genus 0
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively. For RNA structures we plot several genus traces for various types of base pairs, as explained here.

Total Genus
0
sequence length
12
structure length
12
Chain Sequence
b'GGACUUCGGUCC'

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords RNA (5'-R(*GP*GP*AP*CP*UP*UP*CP*GP*GP*UP*CP*C)-3')
publication title Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs.
pubmed doi rcsb
molecule tags Rna
structure length 12
sequence length 12
RNA BGSU Site RNA BGSU Site Entry
ec nomenclature
pdb deposition date 1993-12-21
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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