2AHJA

Nitrile hydratase complexed with nitric oxide
Total Genus 60
204060801001201401601800102030405060
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
200
structure length
192
Chain Sequence
IDHPAQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAAVAQYGYLGPQGEYIVAVEDTPTLKNVIVCSLSTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEIASDIEIRVYDTTAETRYMVLPQRPAGTEGWSQEQLQEIVTKDCLIGVAIPQV
2040608010012014016018015010050
0102030405060Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH1 (18-32)TII1 (36-39)AH2 (39-50)AH5 (77-83)AH3 (53-65)S3 (156-161)TII2 (88-91)AH4 (67-75)S2 (103-108)TVIII1 (91-94)AH8 (140-147)S1 (94-98)O1 (115-117)TIV2 (109-113)AH6 (117-120)3H1 (125-128)AH7 (130-136)AH9 (183-188)TI2 (136-139)EMPTYTI3 (152-155)S4 (167-171)TII3 (175-178)TII4 (178-181)TI1 (100-103)Updating...
connected with : NaN
molecule tags Lyase
publication title Novel non-heme iron center of nitrile hydratase with a claw setting of oxygen atoms.
pubmed doi rcsb
molecule keywords NITRILE HYDRATASE
total genus 60
structure length 192
sequence length 200
chains with identical sequence C
ec nomenclature ec 4.2.1.84: Nitrile hydratase.
pdb deposition date 1997-12-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02979 NHase_alpha Nitrile hydratase, alpha chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.330.10 Alpha Beta Alpha-Beta Complex Nitrile Hydratase; Chain A Nitrile hydratase alpha /Thiocyanate hydrolase gamma 2ahjA00
3WVDA 3HHTA 4FM4A 3A8HA 2QDYA 3VYGC 2DD4C 3QYGA 2ZPBA 1UGQA 2ZPHA 2DXCC 3A8OA 3X28A 2ZPGA 2ZCFA 1V29A 3QXEA 3X24A 1AHJA 2DXBC 3X20A 3VYHA 3A8GA 2D0QA 2CYZA 3X26A 4OB0A 1UGRA 2CZ6A 3WVEA 4ZGDA 4OB3A 4OB2A 2CZ1A 3QZ9A 4ZGJA 3A8LA 4ZGEA 3A8MA 2DD5C 2ZZDC 1IREA 2DPPA 1UGPA 2CZ7A 1UGSA 3X25A 2ZPFA 3QYHA 2AHJA 2ZPEA 2ZPIA 4OB1A 2CZ0A 3QZ5A
chains in the Genus database with same CATH superfamily
3WVDA 3HHTA 4FM4A 3A8HA 2QDYA 3VYGC 2DD4C 3QYGA 2ZPBA 1UGQA 2ZPHA 2DXCC 3A8OA 3X28A 2ZPGA 2ZCFA 1V29A 3QXEA 3X24A 1AHJA 2DXBC 3X20A 3VYHA 3A8GA 2D0QA 2CYZA 3X26A 4OB0A 1UGRA 2CZ6A 3WVEA 4ZGDA 4OB3A 4OB2A 2CZ1A 3QZ9A 4ZGJA 3A8LA 4ZGEA 3A8MA 2DD5C 2ZZDC 1IREA 2DPPA 1UGPA 2CZ7A 1UGSA 3X25A 2ZPFA 3QYHA 2AHJA 2ZPEA 2ZPIA 4OB1A 2CZ0A 3QZ5A
chains in the Genus database with same CATH topology
3WVDA 3HHTA 4FM4A 3A8HA 2QDYA 3VYGC 2DD4C 3QYGA 2ZPBA 1UGQA 2ZPHA 2DXCC 3A8OA 3X28A 2ZPGA 2ZCFA 1V29A 3QXEA 3X24A 1AHJA 2DXBC 3X20A 3VYHA 3A8GA 2D0QA 2CYZA 3X26A 4OB0A 1UGRA 2CZ6A 3WVEA 4ZGDA 4OB3A 4OB2A 2CZ1A 3QZ9A 4ZGJA 3A8LA 4ZGEA 3A8MA 2DD5C 2ZZDC 1IREA 2DPPA 1UGPA 2CZ7A 1UGSA 3X25A 2ZPFA 3QYHA 2AHJA 2ZPEA 2ZPIA 4OB1A 2CZ0A 3QZ5A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3WVD A;  3HHT A;  4FM4 A;  3A8H A;  2QDY A;  3VYG C;  2DD4 C;  3QYG A;  2ZPB A;  1UGQ A;  2ZPH A;  2DXC C;  3A8O A;  3X28 A;  2ZPG A;  2ZCF A;  1V29 A;  3QXE A;  3X24 A;  1AHJ A;  2DXB C;  3X20 A;  3VYH A;  3A8G A;  2D0Q A;  2CYZ A;  3X26 A;  4OB0 A;  1UGR A;  2CZ6 A;  3WVE A;  4ZGD A;  4OB3 A;  4OB2 A;  2CZ1 A;  3QZ9 A;  4ZGJ A;  3A8L A;  4ZGE A;  3A8M A;  2DD5 C;  2ZZD C;  1IRE A;  2DPP A;  1UGP A;  2CZ7 A;  1UGS A;  3X25 A;  2ZPF A;  3QYH A;  2AHJ A;  2ZPE A;  2ZPI A;  4OB1 A;  2CZ0 A;  3QZ5 A; 
#chains in the Genus database with same CATH topology
 3WVD A;  3HHT A;  4FM4 A;  3A8H A;  2QDY A;  3VYG C;  2DD4 C;  3QYG A;  2ZPB A;  1UGQ A;  2ZPH A;  2DXC C;  3A8O A;  3X28 A;  2ZPG A;  2ZCF A;  1V29 A;  3QXE A;  3X24 A;  1AHJ A;  2DXB C;  3X20 A;  3VYH A;  3A8G A;  2D0Q A;  2CYZ A;  3X26 A;  4OB0 A;  1UGR A;  2CZ6 A;  3WVE A;  4ZGD A;  4OB3 A;  4OB2 A;  2CZ1 A;  3QZ9 A;  4ZGJ A;  3A8L A;  4ZGE A;  3A8M A;  2DD5 C;  2ZZD C;  1IRE A;  2DPP A;  1UGP A;  2CZ7 A;  1UGS A;  3X25 A;  2ZPF A;  3QYH A;  2AHJ A;  2ZPE A;  2ZPI A;  4OB1 A;  2CZ0 A;  3QZ5 A; 
#chains in the Genus database with same CATH homology
 3WVD A;  3HHT A;  4FM4 A;  3A8H A;  2QDY A;  3VYG C;  2DD4 C;  3QYG A;  2ZPB A;  1UGQ A;  2ZPH A;  2DXC C;  3A8O A;  3X28 A;  2ZPG A;  2ZCF A;  1V29 A;  3QXE A;  3X24 A;  1AHJ A;  2DXB C;  3X20 A;  3VYH A;  3A8G A;  2D0Q A;  2CYZ A;  3X26 A;  4OB0 A;  1UGR A;  2CZ6 A;  3WVE A;  4ZGD A;  4OB3 A;  4OB2 A;  2CZ1 A;  3QZ9 A;  4ZGJ A;  3A8L A;  4ZGE A;  3A8M A;  2DD5 C;  2ZZD C;  1IRE A;  2DPP A;  1UGP A;  2CZ7 A;  1UGS A;  3X25 A;  2ZPF A;  3QYH A;  2AHJ A;  2ZPE A;  2ZPI A;  4OB1 A;  2CZ0 A;  3QZ5 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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