The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
9
|
sequence length |
149
|
structure length |
149
|
Chain Sequence |
GPNENYYISPSLDTLSSYSLLQLRKVPHLVVGHKSYGKIEFLEPVDLAGIPLTSLGGVIITFEPKTCIIYANLPNRPKRGEGINVRARITCFNCYPVDKSTRKPIKDPNHQLVKRHIERLKKNPNSKFESYDADSGTYVFIVNHAAEQT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Multiple Conformations in the Ligand-binding Site of the Yeast Nuclear Pore-targeting Domain of Nup116p
pubmed doi rcsb |
| molecule tags |
Transport protein
|
| source organism |
Saccharomyces cerevisiae
|
| molecule keywords |
fragment of Nucleoporin NUP116/NSP116
|
| total genus |
9
|
| structure length |
149
|
| sequence length |
149
|
| ec nomenclature | |
| pdb deposition date | 2005-08-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF04096 | Nucleoporin2 | Nucleoporin autopeptidase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | c-terminal autoproteolytic domain of nucleoporin nup98 | Peptidase S59, nucleoporin |
#chains in the Genus database with same CATH superfamily 3TKN C; 3NF5 A; 5E0Q B; 1KO6 A; 3KEP A; 2Q5X A; 2AIV A; 2Q5Y A; 3PBP B; 5HB5 A; 5CWW A; 5HB6 A; 3KES A; #chains in the Genus database with same CATH topology 3TKN C; 3NF5 A; 5E0Q B; 1KO6 A; 3KEP A; 2Q5X A; 2AIV A; 2Q5Y A; 3PBP B; 4DQZ A; 5CWW A; 5HB6 A; 4DRF B; 5HB5 A; 3KES A; 4E6N B; #chains in the Genus database with same CATH homology 3TKN C; 3NF5 A; 5E0Q B; 1KO6 A; 3KEP A; 2Q5X A; 2AIV A; 2Q5Y A; 3PBP B; 5HB5 A; 5CWW A; 5HB6 A; 3KES A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
