2BF3 | Genus

Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	24
sequence length	88
structure length	88
Chain Sequence	NNVGPIIRAGDLVEPVIETAEIDNPGKEITVEDRRAYVRIAAEGELILTRKTLEEQLGRPFNMQELEINLASFAGQIQADEDQIRFYF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 88 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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88 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Pseudomonas mendocina
publication title	Crystal Structures and Functional Studies of T4Mod, the Toluene 4-Monooxygenase Catalytic Effector Protein pubmed doi rcsb
molecule keywords	TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN D
total genus	24
structure length	88
sequence length	88
ec nomenclature	ec 1.14.13.-:
pdb deposition date	2004-12-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02406	MmoB_DmpM	MmoB/DmpM family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.56.10	Alpha Beta	Alpha-Beta Complex	Phenol Hydroxylase P2 Protein	Monooxygenase component MmoB/DmpM	2bf3A00

2BF3A 3I5JE 3RI7E 3GE8E 3Q14E 3GE3E 3Q2AE 2MOBA 3DHHE 2BF5A 2BF3B 3I63E 3Q3NE 1CKVA 3Q3OE 4GAMD 1G10A 3DHIE 2INPL 3Q3ME 2INNL 2BF2A 1G11A 1HQIA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2BF3 A;  3I5J E;  3RI7 E;  3GE8 E;  3Q14 E;  3GE3 E;  3Q2A E;  2MOB A;  3DHH E;  2BF5 A;  2BF3 B;  3I63 E;  3Q3N E;  1CKV A;  3Q3O E;  4GAM D;  1G10 A;  3DHI E;  2INP L;  3Q3M E;  2INN L;  2BF2 A;  1G11 A;  1HQI A; 
#chains in the Genus database with same CATH topology
 2BF3 A;  3I5J E;  3RI7 E;  3GE8 E;  3Q14 E;  3GE3 E;  3Q2A E;  2MOB A;  3DHH E;  2BF5 A;  2BF3 B;  3I63 E;  3Q3N E;  1CKV A;  3Q3O E;  4GAM D;  1G10 A;  3DHI E;  2INP L;  3Q3M E;  2INN L;  2BF2 A;  1G11 A;  1HQI A; 
#chains in the Genus database with same CATH homology
 2BF3 A;  3I5J E;  3RI7 E;  3GE8 E;  3Q14 E;  3GE3 E;  3Q2A E;  2MOB A;  3DHH E;  2BF5 A;  2BF3 B;  3I63 E;  3Q3N E;  1CKV A;  3Q3O E;  4GAM D;  1G10 A;  3DHI E;  2INP L;  3Q3M E;  2INN L;  2BF2 A;  1G11 A;  1HQI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2BF3A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations