2BYO | Genus

Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	43
sequence length	188
structure length	183
Chain Sequence	SDPALLAEIRQSLDATKGLTSVHVAVRTTGKVDSLLGITSADVDVRANPLAAKGVCTYNDEQGVPFRVQGDNISVKLFDDWSNLGSISELSTSRVGVTQLLSGVTNLQAQGTEVIDGISTTKITGTIPASSVKMLDPGAKSARPATVWIAQDGSHHLVRASIDLGSGSIQLTQSKWNEPVNVD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 183 atoms

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183 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Lppx is a Lipoprotein Required for the Translocation of Phthiocerol Dimycocerosates to the Surface of Mycobacterium Tuberculosis. pubmed doi rcsb
molecule keywords	LIPOPROTEIN LPPX
molecule tags	Lipoprotein
source organism	Mycobacterium tuberculosis
total genus	43
structure length	183
sequence length	188
ec nomenclature
pdb deposition date	2005-08-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07161	LppX_LprAFG	LppX_LprAFG lipoprotein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.50.20.20	Mainly Beta	Clam	outer membrane lipoprotein receptor (LolB), chain A	outer membrane lipoprotein receptor (LolB), chain A	2byoA00

4ZRAA 3MHAA 3MH9A 2BYOA 3MH8A 4QA8A
chains in the Genus database with same CATH superfamily

2ZF4A 4ZRAA 1IWMA 4EG9A 3MHAA 2YZYA 3BMZA 3MH8A 4EGDA 4KI3A 4Z48A 2ZPDA 4MXTA 1IWLA 3BUUA 3BK5A 3KSNA 3MH9A 2ZPCA 3WJVA 2BYOA 3WJTA 4QA8A 1IWNA 2ZF3A 2W7QA 3WJUA 2V42A 1UA8A 2V43A 3M4WA 2P4BA
chains in the Genus database with same CATH topology

2ZF4A 4ZRAA 4EGDA 2ZF3A 4EG9A 3MHAA 3MH9A 2BYOA 3BMZA 3MH8A 4QA8A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4ZRA A;  3MHA A;  3MH9 A;  2BYO A;  3MH8 A;  4QA8 A; 
#chains in the Genus database with same CATH topology
 2ZF4 A;  4ZRA A;  1IWM A;  4EG9 A;  3MHA A;  2YZY A;  3BMZ A;  3MH8 A;  4EGD A;  4KI3 A;  4Z48 A;  2ZPD A;  4MXT A;  1IWL A;  3BUU A;  3BK5 A;  3KSN A;  3MH9 A;  2ZPC A;  3WJV A;  2BYO A;  3WJT A;  4QA8 A;  1IWN A;  2ZF3 A;  2W7Q A;  3WJU A;  2V42 A;  1UA8 A;  2V43 A;  3M4W A;  2P4B A; 
#chains in the Genus database with same CATH homology
 2ZF4 A;  4ZRA A;  4EGD A;  2ZF3 A;  4EG9 A;  3MHA A;  3MH9 A;  2BYO A;  3BMZ A;  3MH8 A;  4QA8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2BYOA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations