2DD5 | Genus

Total Genus 62

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	62
sequence length	217
structure length	215
Chain Sequence	EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLSYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 215 atoms

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215 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
publication title	Structure of thiocyanate hydrolase: a new nitrile hydratase family protein with a novel five-coordinate cobalt(III) center. pubmed doi rcsb
molecule keywords	Thiocyanate hydrolase alpha subunit
total genus	62
structure length	215
sequence length	217
chains with identical sequence	F, I, L
ec nomenclature	ec 3.5.5.8: Thiocyanate hydrolase.
pdb deposition date	2006-01-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF02979	NHase_alpha	Nitrile hydratase, alpha chain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.330.10	Alpha Beta	Alpha-Beta Complex	Nitrile Hydratase; Chain A	Nitrile hydratase alpha /Thiocyanate hydrolase gamma	2dd5C00

1UGSA 4OB1A 3X20A 1V29A 4OB2A 4OB3A 3QZ9A 2DD4C 3VYGC 2CZ7A 2ZZDC 2ZPBA 3QXEA 3WVEA 3X26A 4ZGJA 2ZPFA 1UGQA 3WVDA 2ZPGA 1UGPA 2DXCC 4FM4A 4OB0A 2D0QA 3A8OA 3A8HA 2CZ0A 2CYZA 3X28A 2CZ1A 4ZGEA 2DD5C 3A8GA 1UGRA 4ZGDA 1IREA 2ZPHA 2ZCFA 3X24A 3X25A 3QZ5A 3QYGA 2CZ6A 2DPPA 3QYHA 3VYHA 3A8MA 1AHJA 2ZPEA 2DXBC 2QDYA 3A8LA 2AHJA 2ZPIA 3HHTA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1UGS A;  4OB1 A;  3X20 A;  1V29 A;  4OB2 A;  4OB3 A;  3QZ9 A;  2DD4 C;  3VYG C;  2CZ7 A;  2ZZD C;  2ZPB A;  3QXE A;  3WVE A;  3X26 A;  4ZGJ A;  2ZPF A;  1UGQ A;  3WVD A;  2ZPG A;  1UGP A;  2DXC C;  4FM4 A;  4OB0 A;  2D0Q A;  3A8O A;  3A8H A;  2CZ0 A;  2CYZ A;  3X28 A;  2CZ1 A;  4ZGE A;  2DD5 C;  3A8G A;  1UGR A;  4ZGD A;  1IRE A;  2ZPH A;  2ZCF A;  3X24 A;  3X25 A;  3QZ5 A;  3QYG A;  2CZ6 A;  2DPP A;  3QYH A;  3VYH A;  3A8M A;  1AHJ A;  2ZPE A;  2DXB C;  2QDY A;  3A8L A;  2AHJ A;  2ZPI A;  3HHT A; 
#chains in the Genus database with same CATH topology
 1UGS A;  4OB1 A;  3X20 A;  1V29 A;  4OB2 A;  4OB3 A;  3QZ9 A;  2DD4 C;  3VYG C;  2CZ7 A;  2ZZD C;  2ZPB A;  3QXE A;  3WVE A;  3X26 A;  4ZGJ A;  2ZPF A;  1UGQ A;  3WVD A;  2ZPG A;  1UGP A;  2DXC C;  4FM4 A;  4OB0 A;  2D0Q A;  3A8O A;  3A8H A;  2CZ0 A;  2CYZ A;  3X28 A;  2CZ1 A;  4ZGE A;  2DD5 C;  3A8G A;  1UGR A;  4ZGD A;  1IRE A;  2ZPH A;  2ZCF A;  3X24 A;  3X25 A;  3QZ5 A;  3QYG A;  2CZ6 A;  2DPP A;  3QYH A;  3VYH A;  3A8M A;  1AHJ A;  2ZPE A;  2DXB C;  2QDY A;  3A8L A;  2AHJ A;  2ZPI A;  3HHT A; 
#chains in the Genus database with same CATH homology
 1UGS A;  4OB1 A;  3X20 A;  1V29 A;  4OB2 A;  4OB3 A;  3QZ9 A;  2DD4 C;  3VYG C;  2CZ7 A;  2ZZD C;  2ZPB A;  3QXE A;  3WVE A;  3X26 A;  4ZGJ A;  2ZPF A;  1UGQ A;  3WVD A;  2ZPG A;  1UGP A;  2DXC C;  4FM4 A;  4OB0 A;  2D0Q A;  3A8O A;  3A8H A;  2CZ0 A;  2CYZ A;  3X28 A;  2CZ1 A;  4ZGE A;  2DD5 C;  3A8G A;  1UGR A;  4ZGD A;  1IRE A;  2ZPH A;  2ZCF A;  3X24 A;  3X25 A;  3QZ5 A;  3QYG A;  2CZ6 A;  2DPP A;  3QYH A;  3VYH A;  3A8M A;  1AHJ A;  2ZPE A;  2DXB C;  2QDY A;  3A8L A;  2AHJ A;  2ZPI A;  3HHT A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2DD5C

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations