2DXC | Genus

Total Genus 60

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	60
sequence length	217
structure length	215
Chain Sequence	EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLRVLADSPTLKHVVVCTLSYPRPILGQSPEWYRSPNYRRRLVRWPRQVLAEFGLQLPSEVQIRVADSNQKTRYIVMPVRPEGTDGWTEDQLAEIVTRDCLIGVAVPKPGITVNAKRPVLKANRPV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 215 atoms

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215 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Thiobacillus thioparus
publication title	Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification pubmed doi rcsb
molecule keywords	Thiocyanate hydrolase subunit alpha
total genus	60
structure length	215
sequence length	217
chains with identical sequence	F, I, L
ec nomenclature	ec 3.5.5.8: Thiocyanate hydrolase.
pdb deposition date	2006-08-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF02979	NHase_alpha	Nitrile hydratase, alpha chain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.330.10	Alpha Beta	Alpha-Beta Complex	Nitrile Hydratase; Chain A	Nitrile hydratase alpha /Thiocyanate hydrolase gamma	2dxcC00

3WVEA 4ZGJA 3A8LA 2D0QA 2CZ1A 3X28A 2DXBC 1UGQA 3VYHA 2DD4C 2DD5C 4ZGEA 1AHJA 2ZPFA 4OB2A 2DXCC 2CZ0A 3X25A 2ZPEA 3QYGA 3WVDA 4ZGDA 1UGPA 2CYZA 2ZPGA 3QZ5A 4OB1A 3A8GA 3X20A 3HHTA 3X24A 2ZPBA 2DPPA 4OB3A 3QZ9A 3X26A 1IREA 3QXEA 4FM4A 2CZ6A 3A8HA 3QYHA 2AHJA 2CZ7A 1V29A 4OB0A 3A8OA 2ZPIA 2ZPHA 3VYGC 2ZZDC 3A8MA 1UGSA 2ZCFA 2QDYA 1UGRA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3WVE A;  4ZGJ A;  3A8L A;  2D0Q A;  2CZ1 A;  3X28 A;  2DXB C;  1UGQ A;  3VYH A;  2DD4 C;  2DD5 C;  4ZGE A;  1AHJ A;  2ZPF A;  4OB2 A;  2DXC C;  2CZ0 A;  3X25 A;  2ZPE A;  3QYG A;  3WVD A;  4ZGD A;  1UGP A;  2CYZ A;  2ZPG A;  3QZ5 A;  4OB1 A;  3A8G A;  3X20 A;  3HHT A;  3X24 A;  2ZPB A;  2DPP A;  4OB3 A;  3QZ9 A;  3X26 A;  1IRE A;  3QXE A;  4FM4 A;  2CZ6 A;  3A8H A;  3QYH A;  2AHJ A;  2CZ7 A;  1V29 A;  4OB0 A;  3A8O A;  2ZPI A;  2ZPH A;  3VYG C;  2ZZD C;  3A8M A;  1UGS A;  2ZCF A;  2QDY A;  1UGR A; 
#chains in the Genus database with same CATH topology
 3WVE A;  4ZGJ A;  3A8L A;  2D0Q A;  2CZ1 A;  3X28 A;  2DXB C;  1UGQ A;  3VYH A;  2DD4 C;  2DD5 C;  4ZGE A;  1AHJ A;  2ZPF A;  4OB2 A;  2DXC C;  2CZ0 A;  3X25 A;  2ZPE A;  3QYG A;  3WVD A;  4ZGD A;  1UGP A;  2CYZ A;  2ZPG A;  3QZ5 A;  4OB1 A;  3A8G A;  3X20 A;  3HHT A;  3X24 A;  2ZPB A;  2DPP A;  4OB3 A;  3QZ9 A;  3X26 A;  1IRE A;  3QXE A;  4FM4 A;  2CZ6 A;  3A8H A;  3QYH A;  2AHJ A;  2CZ7 A;  1V29 A;  4OB0 A;  3A8O A;  2ZPI A;  2ZPH A;  3VYG C;  2ZZD C;  3A8M A;  1UGS A;  2ZCF A;  2QDY A;  1UGR A; 
#chains in the Genus database with same CATH homology
 3WVE A;  4ZGJ A;  3A8L A;  2D0Q A;  2CZ1 A;  3X28 A;  2DXB C;  1UGQ A;  3VYH A;  2DD4 C;  2DD5 C;  4ZGE A;  1AHJ A;  2ZPF A;  4OB2 A;  2DXC C;  2CZ0 A;  3X25 A;  2ZPE A;  3QYG A;  3WVD A;  4ZGD A;  1UGP A;  2CYZ A;  2ZPG A;  3QZ5 A;  4OB1 A;  3A8G A;  3X20 A;  3HHT A;  3X24 A;  2ZPB A;  2DPP A;  4OB3 A;  3QZ9 A;  3X26 A;  1IRE A;  3QXE A;  4FM4 A;  2CZ6 A;  3A8H A;  3QYH A;  2AHJ A;  2CZ7 A;  1V29 A;  4OB0 A;  3A8O A;  2ZPI A;  2ZPH A;  3VYG C;  2ZZD C;  3A8M A;  1UGS A;  2ZCF A;  2QDY A;  1UGR A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2DXCC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations