2IDG | Genus

Total Genus 58

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	58
sequence length	160
structure length	160
Chain Sequence	MTIGRAKVYATLSKIFYHLFYDEAIPKDCREIIEKFGEIDFNLRSVLVRELRGSVLIKDMPQSLAEVYESVMKDFYERYGFQASELHADHIAVELAFMSKLVEREISLAQQMKEEELYKIRAAQHRFIKAHLQPLVKNLPSAPLLNFVRDFVREDAKYLY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 160 atoms

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160 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Archaeoglobus fulgidus
publication title	Crystal structure of Hypothetical Protein AF0160 from Archaeoglobus fulgidus at 2.69 Angstrom resolution rcsb
molecule keywords	Hypothetical protein AF0160
total genus	58
structure length	160
sequence length	160
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2006-09-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02613	Nitrate_red_del	Nitrate reductase delta subunit

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.3480.10	Mainly Alpha	Orthogonal Bundle	TorD-like	TorD-like	2idgA00

2IDGA 2YJMA 2XOLA 3CW0A 3EFPA 3U41A 2Y6YA 1S9UA
chains in the Genus database with same CATH superfamily

2IDGA 2YJMA 3QNFA 2XOLA 3CW0A 3EFPA 3U41A 2Y6YA 1S9UA
chains in the Genus database with same CATH topology

2IDGA 2YJMA 3QNFA 2XOLA 3CW0A 3EFPA 3U41A 2Y6YA 1S9UA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2IDG A;  2YJM A;  2XOL A;  3CW0 A;  3EFP A;  3U41 A;  2Y6Y A;  1S9U A; 
#chains in the Genus database with same CATH topology
 2IDG A;  2YJM A;  3QNF A;  2XOL A;  3CW0 A;  3EFP A;  3U41 A;  2Y6Y A;  1S9U A; 
#chains in the Genus database with same CATH homology
 2IDG A;  2YJM A;  3QNF A;  2XOL A;  3CW0 A;  3EFP A;  3U41 A;  2Y6Y A;  1S9U A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2IDGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations