2IEM | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	211
structure length	211
Chain Sequence	SLFDKKHLVSPADALPGRNTPMPVATLHAVNGHSMTNVPDGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVSSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHKNPYGYCGIGGIGVSLPPEA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 211 atoms

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211 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Escherichia coli
publication title	Solution Structure and Backbone Dynamics of the Reduced Form and an Oxidized Form of E. coli Methionine Sulfoxide Reductase A (MsrA): Structural Insight of the MsrA Catalytic Cycle. pubmed doi rcsb
molecule keywords	Peptide methionine sulfoxide reductase msrA
total genus	35
structure length	211
sequence length	211
ec nomenclature	ec 1.8.4.11: Peptide-methionine (S)-S-oxide reductase.
pdb deposition date	2006-09-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01625	PMSR	Peptide methionine sulfoxide reductase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1060.10	Alpha Beta	2-Layer Sandwich	Peptide Methionine Sulfoxide Reductase; Chain A	Peptide methionine sulphoxide reductase MsrA	2iemA00

2L90A 3PIMA 4LWMA 4D7LA 3BQFA 4U66A 3E0MA 1NWAA 4W8CA 3BQEA 4LWKA 4GWBA 2GT3A 1FVGA 4LWJA 3PINB 3BQHA 3BQGA 3PILA 1FVAA 2J89A 4LWLA 2IEMA 1FF3A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2L90 A;  3PIM A;  4LWM A;  4D7L A;  3BQF A;  4U66 A;  3E0M A;  1NWA A;  4W8C A;  3BQE A;  4LWK A;  4GWB A;  2GT3 A;  1FVG A;  4LWJ A;  3PIN B;  3BQH A;  3BQG A;  3PIL A;  1FVA A;  2J89 A;  4LWL A;  2IEM A;  1FF3 A; 
#chains in the Genus database with same CATH topology
 2L90 A;  3PIM A;  4LWM A;  4D7L A;  3BQF A;  4U66 A;  3E0M A;  1NWA A;  4W8C A;  3BQE A;  4LWK A;  4GWB A;  2GT3 A;  1FVG A;  4LWJ A;  3PIN B;  3BQH A;  3BQG A;  3PIL A;  1FVA A;  2J89 A;  4LWL A;  2IEM A;  1FF3 A; 
#chains in the Genus database with same CATH homology
 2L90 A;  3PIM A;  4LWM A;  4D7L A;  3BQF A;  4U66 A;  3E0M A;  1NWA A;  4W8C A;  3BQE A;  4LWK A;  4GWB A;  2GT3 A;  1FVG A;  4LWJ A;  3PIN B;  3BQH A;  3BQG A;  3PIL A;  1FVA A;  2J89 A;  4LWL A;  2IEM A;  1FF3 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2IEMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations