2INP | Genus

Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	14
sequence length	86
structure length	83
Chain Sequence	QLVFIVFQDNDDSRYLAEAVMEDNPDAEMQHQPAMIRIQAEKRLVINRETMEEKLGRDWDVQEMLINVSIAGNVDEDHFILEW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 83 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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83 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Pseudomonas stutzeri
publication title	X-ray Structure of a Hydroxylase-Regulatory Protein Complex from a Hydrocarbon-Oxidizing Multicomponent Monooxygenase, Pseudomonas sp. OX1 Phenol Hydroxylase. pubmed doi rcsb
molecule keywords	Phenol hydroxylase component phN
total genus	14
structure length	83
sequence length	86
ec nomenclature
pdb deposition date	2006-10-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
L	PF02406	MmoB_DmpM	MmoB/DmpM family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.56.10	Alpha Beta	Alpha-Beta Complex	Phenol Hydroxylase P2 Protein	Monooxygenase component MmoB/DmpM	2inpL00

1CKVA 3Q3NE 2INNL 1G11A 1HQIA 2MOBA 3GE8E 4GAMD 3Q3ME 2BF3A 2BF5A 3DHHE 3RI7E 1G10A 3DHIE 3I63E 3GE3E 2BF3B 3Q3OE 2INPL 2BF2A 3I5JE 3Q14E 3Q2AE
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1CKV A;  3Q3N E;  2INN L;  1G11 A;  1HQI A;  2MOB A;  3GE8 E;  4GAM D;  3Q3M E;  2BF3 A;  2BF5 A;  3DHH E;  3RI7 E;  1G10 A;  3DHI E;  3I63 E;  3GE3 E;  2BF3 B;  3Q3O E;  2INP L;  2BF2 A;  3I5J E;  3Q14 E;  3Q2A E; 
#chains in the Genus database with same CATH topology
 1CKV A;  3Q3N E;  2INN L;  1G11 A;  1HQI A;  2MOB A;  3GE8 E;  4GAM D;  3Q3M E;  2BF3 A;  2BF5 A;  3DHH E;  3RI7 E;  1G10 A;  3DHI E;  3I63 E;  3GE3 E;  2BF3 B;  3Q3O E;  2INP L;  2BF2 A;  3I5J E;  3Q14 E;  3Q2A E; 
#chains in the Genus database with same CATH homology
 1CKV A;  3Q3N E;  2INN L;  1G11 A;  1HQI A;  2MOB A;  3GE8 E;  4GAM D;  3Q3M E;  2BF3 A;  2BF5 A;  3DHH E;  3RI7 E;  1G10 A;  3DHI E;  3I63 E;  3GE3 E;  2BF3 B;  3Q3O E;  2INP L;  2BF2 A;  3I5J E;  3Q14 E;  3Q2A E;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2INPL

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations