2JZKA

Structure of tbcvnh (t. borchii cvnh) (casp target)
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
103
structure length
103
Chain Sequence
MSYADSSRNAVLTNGGRTLRAECRNADGNWVTSELDLDTCIGNPNGFLGWGMQNFSHSSEDIKLEEGGRKLTCRPKTVDGGFRERQGIDLNRIQNVNGRLVFQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The evolutionarily conserved family of cyanovirin-N homologs: structures and carbohydrate specificity.
pubmed doi rcsb
molecule tags Carbohydrate binding protein
source organism Tuber borchii
molecule keywords Cyanovirin-N homolog
total genus 22
structure length 103
sequence length 103
ec nomenclature
pdb deposition date 2008-01-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08881 CVNH CVNH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.60.10 Mainly Beta Roll HIV-inactivating Protein, Cyanovirin-n Cyanovirin-N 2jzkA00
3GXZA 3S3YA 1IIYA 1L5EA 3S3ZA 2EZMA 2L2FA 1L5BA 3EZMA 2JZKA 5C8QB 3GXYA 1J4VA 2JZJA 1N02A 2PYSA 5C8OA 1LOMA 4J4EA 4J4FA 2Z21A 5C8PA 2RP3A 2RDKA 3HNXA 2JZLA 2EZNA 2YHHA 3CZZA 2L9YA 3HP8A 3LHCA 4J4CA 3HNUX 2Y1SA 2KJLA
chains in the Genus database with same CATH superfamily
3GXZA 3S3YA 1IIYA 1L5EA 3S3ZA 2EZMA 2L2FA 1L5BA 3EZMA 2JZKA 5C8QB 3GXYA 1J4VA 2JZJA 1N02A 2PYSA 5C8OA 1LOMA 4J4EA 4J4FA 2Z21A 5C8PA 2RP3A 2RDKA 3HNXA 2JZLA 2EZNA 2YHHA 3CZZA 2L9YA 3HP8A 3LHCA 4J4CA 3HNUX 2Y1SA 2KJLA
chains in the Genus database with same CATH topology
3GXZA 3S3YA 1IIYA 1L5EA 3S3ZA 2EZMA 2L2FA 1L5BA 3EZMA 2JZKA 5C8QB 3GXYA 1J4VA 2JZJA 1N02A 2PYSA 5C8OA 1LOMA 4J4EA 4J4FA 2Z21A 5C8PA 2RP3A 2RDKA 3HNXA 2JZLA 2EZNA 2YHHA 3CZZA 2L9YA 3HP8A 3LHCA 4J4CA 3HNUX 2Y1SA 2KJLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GXZ A;  3S3Y A;  1IIY A;  1L5E A;  3S3Z A;  2EZM A;  2L2F A;  1L5B A;  3EZM A;  2JZK A;  5C8Q B;  3GXY A;  1J4V A;  2JZJ A;  1N02 A;  2PYS A;  5C8O A;  1LOM A;  4J4E A;  4J4F A;  2Z21 A;  5C8P A;  2RP3 A;  2RDK A;  3HNX A;  2JZL A;  2EZN A;  2YHH A;  3CZZ A;  2L9Y A;  3HP8 A;  3LHC A;  4J4C A;  3HNU X;  2Y1S A;  2KJL A; 
#chains in the Genus database with same CATH topology
 3GXZ A;  3S3Y A;  1IIY A;  1L5E A;  3S3Z A;  2EZM A;  2L2F A;  1L5B A;  3EZM A;  2JZK A;  5C8Q B;  3GXY A;  1J4V A;  2JZJ A;  1N02 A;  2PYS A;  5C8O A;  1LOM A;  4J4E A;  4J4F A;  2Z21 A;  5C8P A;  2RP3 A;  2RDK A;  3HNX A;  2JZL A;  2EZN A;  2YHH A;  3CZZ A;  2L9Y A;  3HP8 A;  3LHC A;  4J4C A;  3HNU X;  2Y1S A;  2KJL A; 
#chains in the Genus database with same CATH homology
 3GXZ A;  3S3Y A;  1IIY A;  1L5E A;  3S3Z A;  2EZM A;  2L2F A;  1L5B A;  3EZM A;  2JZK A;  5C8Q B;  3GXY A;  1J4V A;  2JZJ A;  1N02 A;  2PYS A;  5C8O A;  1LOM A;  4J4E A;  4J4F A;  2Z21 A;  5C8P A;  2RP3 A;  2RDK A;  3HNX A;  2JZL A;  2EZN A;  2YHH A;  3CZZ A;  2L9Y A;  3HP8 A;  3LHC A;  4J4C A;  3HNU X;  2Y1S A;  2KJL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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