2O97A

Crystal structure of e. coli hu heterodimer
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
90
structure length
70
Chain Sequence
MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHNVPAFVSGKALKDAVK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (3-14)AH2 (18-38)TII1 (44-47)TIV2 (52-75)S2 (48-53)S1 (42-44)EMPTYUpdating...
connected with : NaN
publication title Spiral structure of Escherichia coli HU{alpha}beta provides foundation for DNA supercoiling.
pubmed doi rcsb
molecule keywords DNA-binding protein HU-alpha
molecule tags Dna binding protein
source organism Escherichia coli
total genus 18
structure length 70
sequence length 90
ec nomenclature
pdb deposition date 2006-12-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00216 Bac_DNA_binding Bacterial DNA-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.520.10 Few Secondary Structures Irregular HU Protein; Chain A IHF-like DNA-binding proteins 2o97A00
1OWGB 1P71A 1MULA 1HUUA 2O97B 4N1VA 1OUZB 1OWGA 2HT0B 2IIEA 1B8ZA 1P51A 1OUZA 2O97A 1EXEA 4YF0A 2HT0A 1OWFB 1RIYA 4YFTC 4YEWC 2NDPA 5EKAA 3RHIA 4QJNA 1OWFA 2IIFA 4QJUA 2NP2A 4YFTA 4YEWA 4PT4A 4YEYA 1P78A 1HUEA 1WTUA 4FMRA 4P3VA 4YFHA 1IHFB 5L8ZA 5FBMA 4YEXA 1IHFA 4DKYA
chains in the Genus database with same CATH superfamily
1OWGB 1P71A 1MULA 1HUUA 2O97B 4N1VA 1OUZB 1OWGA 2HT0B 2IIEA 1B8ZA 1P51A 1OUZA 2O97A 1EXEA 4YF0A 2HT0A 1OWFB 1RIYA 4YFTC 4YEWC 2NDPA 5EKAA 3RHIA 4QJNA 1OWFA 2IIFA 4QJUA 2NP2A 4YFTA 4YEWA 4PT4A 4YEYA 1P78A 1HUEA 1WTUA 4FMRA 4P3VA 4YFHA 1IHFB 5L8ZA 5FBMA 4YEXA 1IHFA 4DKYA
chains in the Genus database with same CATH topology
1OWGB 1P71A 1MULA 1HUUA 2O97B 4N1VA 1OUZB 1OWGA 2HT0B 2IIEA 1B8ZA 1P51A 1OUZA 2O97A 1EXEA 4YF0A 2HT0A 1OWFB 1RIYA 4YFTC 4YEWC 2NDPA 5EKAA 3RHIA 4QJNA 1OWFA 2IIFA 4QJUA 2NP2A 4YFTA 4YEWA 4PT4A 4YEYA 1P78A 1HUEA 1WTUA 4FMRA 4P3VA 4YFHA 1IHFB 5L8ZA 5FBMA 4YEXA 1IHFA 4DKYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OWG B;  1P71 A;  1MUL A;  1HUU A;  2O97 B;  4N1V A;  1OUZ B;  1OWG A;  2HT0 B;  2IIE A;  1B8Z A;  1P51 A;  1OUZ A;  2O97 A;  1EXE A;  4YF0 A;  2HT0 A;  1OWF B;  1RIY A;  4YFT C;  4YEW C;  2NDP A;  5EKA A;  3RHI A;  4QJN A;  1OWF A;  2IIF A;  4QJU A;  2NP2 A;  4YFT A;  4YEW A;  4PT4 A;  4YEY A;  1P78 A;  1HUE A;  1WTU A;  4FMR A;  4P3V A;  4YFH A;  1IHF B;  5L8Z A;  5FBM A;  4YEX A;  1IHF A;  4DKY A; 
#chains in the Genus database with same CATH topology
 1OWG B;  1P71 A;  1MUL A;  1HUU A;  2O97 B;  4N1V A;  1OUZ B;  1OWG A;  2HT0 B;  2IIE A;  1B8Z A;  1P51 A;  1OUZ A;  2O97 A;  1EXE A;  4YF0 A;  2HT0 A;  1OWF B;  1RIY A;  4YFT C;  4YEW C;  2NDP A;  5EKA A;  3RHI A;  4QJN A;  1OWF A;  2IIF A;  4QJU A;  2NP2 A;  4YFT A;  4YEW A;  4PT4 A;  4YEY A;  1P78 A;  1HUE A;  1WTU A;  4FMR A;  4P3V A;  4YFH A;  1IHF B;  5L8Z A;  5FBM A;  4YEX A;  1IHF A;  4DKY A; 
#chains in the Genus database with same CATH homology
 1OWG B;  1P71 A;  1MUL A;  1HUU A;  2O97 B;  4N1V A;  1OUZ B;  1OWG A;  2HT0 B;  2IIE A;  1B8Z A;  1P51 A;  1OUZ A;  2O97 A;  1EXE A;  4YF0 A;  2HT0 A;  1OWF B;  1RIY A;  4YFT C;  4YEW C;  2NDP A;  5EKA A;  3RHI A;  4QJN A;  1OWF A;  2IIF A;  4QJU A;  2NP2 A;  4YFT A;  4YEW A;  4PT4 A;  4YEY A;  1P78 A;  1HUE A;  1WTU A;  4FMR A;  4P3V A;  4YFH A;  1IHF B;  5L8Z A;  5FBM A;  4YEX A;  1IHF A;  4DKY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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