2OL0A

High resolution crystal structures of vaccinia virus dutpase
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
124
structure length
124
Chain Sequence
SPVRFVKETNRAKSPTRQSPGAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSGLSLKGIDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (14-17)TI1 (16-19)TI2 (26-29)S6 (62-68)TII1 (43-46)S2 (32-36)S9 (93-98)S3 (40-42)S4 (46-51)S8 (83-84)TI3 (85-88)S5 (54-57)AH1 (70-75)TII2 (59-62)S7 (77-80)S11 (110-119)TII3 (107-110)S10 (104-106)S1 (11-14)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Vaccinia virus
publication title Structures of vaccinia virus dUTPase and its nucleotide complexes.
pubmed doi rcsb
molecule keywords Deoxyuridine 5'-triphosphate nucleotidohydrolase
total genus 22
structure length 124
sequence length 124
chains with identical sequence B, C
ec nomenclature ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date 2007-01-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 2ol0A00
2BAZA 4AO5A 3TPNA 2OL1A 1RNJA 2V9XA 1XS1A 1OGHA 3GF0A 1PKHA 3P48A 3TPYA 3I93A 1F7PA 4OOQA 3HHQA 1Q5UX 3ZF6A 3ARAA 3SO2A 1F7RA 4A6AA 3TRNA 4GK6A 5EDDA 3ZF0A 2HR6A 3LOJA 4APZ1 1XS6A 2OKDA 3T70A 3TSLA 2D4MA 3TP1A 2Y1TA 3TPWA 2XY3A 3TTAA 2WE2A 3TPSA 5ECTA 2OKEA 1PKJA 3MDXA 1F7QA 2HQUA 2PC5A 1PKKA 3C2TA 3HZAA 4DHKA 3MBQA 3TQZA 3ZF2A 4AOOA 3F4FA 3TRLA 3ECYA 3T60A 4GV8A 5CCOA 1DUPA 2HRMA 2R9QA 1XS4A 1DUCA 1Q5HA 4WRKA 2PY4A 3ZF1A 2D4LA 2HXDA 3TQ3A 1SYLA 2OL0A 3ZF4A 1DUTA 1SLHA 3CA9A 3T6YA 3LQWA 2D4NA 2XCDA 3C3IA 3ARNA 5F9KA 2QXXA 1F7DA 4LHRA 3TQ4A 2WE1A 3ZF5A 3EHWA 2ZDCA 1F7KA 2WE0A 1SNFA 1SEHA 4OOPA 3T64A 3TS6A 2BT1A 5CCTA 1VYQA 1DUNA 3H6DA 1EU5A 1F7NA 2YZJA 3ZEZA 2WE3A 4B0HA 3TQ5A 1MQ7A 2QLPA 2J4QA 2XCEA 2Y8CA 2OKBA 1EUWA 1SJNA 2HXBA 4XJCA 3KM3A 1SMCA 4GCYA 1RN8A 2J4HA 1SM8A 1SIXA 1DUDA 2XX6A 3ZF3A 4AOZA 1F7OA 3H6XA 2BSYA
chains in the Genus database with same CATH superfamily
2BAZA 4AO5A 3TPNA 2OL1A 1RNJA 2V9XA 1XS1A 1OGHA 3GF0A 1PKHA 3P48A 3TPYA 3I93A 1F7PA 4OOQA 3HHQA 1Q5UX 3ZF6A 3ARAA 3SO2A 1F7RA 4A6AA 3TRNA 4GK6A 5EDDA 3ZF0A 2HR6A 3LOJA 1TULA 4APZ1 1XS6A 2OKDA 3T70A 3TSLA 2D4MA 3TP1A 2Y1TA 3TPWA 2XY3A 3TTAA 2WE2A 3TPSA 5ECTA 2OKEA 1PKJA 3MDXA 1F7QA 2HQUA 2PC5A 1PKKA 3C2TA 3HZAA 4DHKA 3MBQA 3TQZA 3ZF2A 4AOOA 3F4FA 3TRLA 3ECYA 3T60A 4GV8A 5CCOA 1DUPA 2HRMA 2R9QA 1XS4A 1DUCA 1Q5HA 4WRKA 2PY4A 3ZF1A 2D4LA 2HXDA 3TQ3A 1SYLA 2OL0A 3ZF4A 1DUTA 1SLHA 3CA9A 3T6YA 3LQWA 2D4NA 2XCDA 3C3IA 3ARNA 5F9KA 2QXXA 1F7DA 4LHRA 3TQ4A 2WE1A 3ZF5A 3EHWA 2ZDCA 1F7KA 2WE0A 1SNFA 1SEHA 4OOPA 3T64A 3TS6A 2BT1A 5CCTA 1VYQA 1DUNA 3H6DA 1EU5A 1F7NA 2YZJA 3ZEZA 2WE3A 4B0HA 3TQ5A 1MQ7A 2QLPA 2J4QA 2XCEA 2Y8CA 2OKBA 1EUWA 1SJNA 2HXBA 4XJCA 3KM3A 1SMCA 4GCYA 1RN8A 2J4HA 1SM8A 1SIXA 1DUDA 2XX6A 3ZF3A 4AOZA 1F7OA 3H6XA 2BSYA
chains in the Genus database with same CATH topology
2BAZA 4AO5A 3TPNA 2OL1A 1RNJA 2V9XA 1XS1A 1OGHA 3GF0A 1PKHA 3P48A 3TPYA 3I93A 1F7PA 4OOQA 3HHQA 1Q5UX 3ZF6A 3ARAA 3SO2A 1F7RA 4A6AA 3TRNA 4GK6A 5EDDA 3ZF0A 2HR6A 3LOJA 4APZ1 1XS6A 2OKDA 3T70A 3TSLA 2D4MA 3TP1A 2Y1TA 3TPWA 2XY3A 3TTAA 2WE2A 3TPSA 5ECTA 2OKEA 1PKJA 3MDXA 1F7QA 2HQUA 2PC5A 1PKKA 3C2TA 3HZAA 4DHKA 3MBQA 3TQZA 3ZF2A 4AOOA 3F4FA 3TRLA 3ECYA 3T60A 4GV8A 5CCOA 1DUPA 2HRMA 2R9QA 1XS4A 1DUCA 1Q5HA 4WRKA 2PY4A 3ZF1A 2D4LA 2HXDA 3TQ3A 1SYLA 2OL0A 3ZF4A 1DUTA 1SLHA 3CA9A 3T6YA 3LQWA 2D4NA 2XCDA 3C3IA 3ARNA 5F9KA 2QXXA 1F7DA 4LHRA 3TQ4A 2WE1A 3ZF5A 3EHWA 2ZDCA 1F7KA 2WE0A 1SNFA 1SEHA 4OOPA 3T64A 3TS6A 2BT1A 5CCTA 1VYQA 1DUNA 3H6DA 1EU5A 1F7NA 2YZJA 3ZEZA 2WE3A 4B0HA 3TQ5A 1MQ7A 2QLPA 2J4QA 2XCEA 2Y8CA 2OKBA 1EUWA 1SJNA 2HXBA 4XJCA 3KM3A 1SMCA 4GCYA 1RN8A 2J4HA 1SM8A 1SIXA 1DUDA 2XX6A 3ZF3A 4AOZA 1F7OA 3H6XA 2BSYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BAZ A;  4AO5 A;  3TPN A;  2OL1 A;  1RNJ A;  2V9X A;  1XS1 A;  1OGH A;  3GF0 A;  1PKH A;  3P48 A;  3TPY A;  3I93 A;  1F7P A;  4OOQ A;  3HHQ A;  1Q5U X;  3ZF6 A;  3ARA A;  3SO2 A;  1F7R A;  4A6A A;  3TRN A;  4GK6 A;  5EDD A;  3ZF0 A;  2HR6 A;  3LOJ A;  4APZ 1;  1XS6 A;  2OKD A;  3T70 A;  3TSL A;  2D4M A;  3TP1 A;  2Y1T A;  3TPW A;  2XY3 A;  3TTA A;  2WE2 A;  3TPS A;  5ECT A;  2OKE A;  1PKJ A;  3MDX A;  1F7Q A;  2HQU A;  2PC5 A;  1PKK A;  3C2T A;  3HZA A;  4DHK A;  3MBQ A;  3TQZ A;  3ZF2 A;  4AOO A;  3F4F A;  3TRL A;  3ECY A;  3T60 A;  4GV8 A;  5CCO A;  1DUP A;  2HRM A;  2R9Q A;  1XS4 A;  1DUC A;  1Q5H A;  4WRK A;  2PY4 A;  3ZF1 A;  2D4L A;  2HXD A;  3TQ3 A;  1SYL A;  2OL0 A;  3ZF4 A;  1DUT A;  1SLH A;  3CA9 A;  3T6Y A;  3LQW A;  2D4N A;  2XCD A;  3C3I A;  3ARN A;  5F9K A;  2QXX A;  1F7D A;  4LHR A;  3TQ4 A;  2WE1 A;  3ZF5 A;  3EHW A;  2ZDC A;  1F7K A;  2WE0 A;  1SNF A;  1SEH A;  4OOP A;  3T64 A;  3TS6 A;  2BT1 A;  5CCT A;  1VYQ A;  1DUN A;  3H6D A;  1EU5 A;  1F7N A;  2YZJ A;  3ZEZ A;  2WE3 A;  4B0H A;  3TQ5 A;  1MQ7 A;  2QLP A;  2J4Q A;  2XCE A;  2Y8C A;  2OKB A;  1EUW A;  1SJN A;  2HXB A;  4XJC A;  3KM3 A;  1SMC A;  4GCY A;  1RN8 A;  2J4H A;  1SM8 A;  1SIX A;  1DUD A;  2XX6 A;  3ZF3 A;  4AOZ A;  1F7O A;  3H6X A;  2BSY A; 
#chains in the Genus database with same CATH topology
 2BAZ A;  4AO5 A;  3TPN A;  2OL1 A;  1RNJ A;  2V9X A;  1XS1 A;  1OGH A;  3GF0 A;  1PKH A;  3P48 A;  3TPY A;  3I93 A;  1F7P A;  4OOQ A;  3HHQ A;  1Q5U X;  3ZF6 A;  3ARA A;  3SO2 A;  1F7R A;  4A6A A;  3TRN A;  4GK6 A;  5EDD A;  3ZF0 A;  2HR6 A;  3LOJ A;  1TUL A;  4APZ 1;  1XS6 A;  2OKD A;  3T70 A;  3TSL A;  2D4M A;  3TP1 A;  2Y1T A;  3TPW A;  2XY3 A;  3TTA A;  2WE2 A;  3TPS A;  5ECT A;  2OKE A;  1PKJ A;  3MDX A;  1F7Q A;  2HQU A;  2PC5 A;  1PKK A;  3C2T A;  3HZA A;  4DHK A;  3MBQ A;  3TQZ A;  3ZF2 A;  4AOO A;  3F4F A;  3TRL A;  3ECY A;  3T60 A;  4GV8 A;  5CCO A;  1DUP A;  2HRM A;  2R9Q A;  1XS4 A;  1DUC A;  1Q5H A;  4WRK A;  2PY4 A;  3ZF1 A;  2D4L A;  2HXD A;  3TQ3 A;  1SYL A;  2OL0 A;  3ZF4 A;  1DUT A;  1SLH A;  3CA9 A;  3T6Y A;  3LQW A;  2D4N A;  2XCD A;  3C3I A;  3ARN A;  5F9K A;  2QXX A;  1F7D A;  4LHR A;  3TQ4 A;  2WE1 A;  3ZF5 A;  3EHW A;  2ZDC A;  1F7K A;  2WE0 A;  1SNF A;  1SEH A;  4OOP A;  3T64 A;  3TS6 A;  2BT1 A;  5CCT A;  1VYQ A;  1DUN A;  3H6D A;  1EU5 A;  1F7N A;  2YZJ A;  3ZEZ A;  2WE3 A;  4B0H A;  3TQ5 A;  1MQ7 A;  2QLP A;  2J4Q A;  2XCE A;  2Y8C A;  2OKB A;  1EUW A;  1SJN A;  2HXB A;  4XJC A;  3KM3 A;  1SMC A;  4GCY A;  1RN8 A;  2J4H A;  1SM8 A;  1SIX A;  1DUD A;  2XX6 A;  3ZF3 A;  4AOZ A;  1F7O A;  3H6X A;  2BSY A; 
#chains in the Genus database with same CATH homology
 2BAZ A;  4AO5 A;  3TPN A;  2OL1 A;  1RNJ A;  2V9X A;  1XS1 A;  1OGH A;  3GF0 A;  1PKH A;  3P48 A;  3TPY A;  3I93 A;  1F7P A;  4OOQ A;  3HHQ A;  1Q5U X;  3ZF6 A;  3ARA A;  3SO2 A;  1F7R A;  4A6A A;  3TRN A;  4GK6 A;  5EDD A;  3ZF0 A;  2HR6 A;  3LOJ A;  4APZ 1;  1XS6 A;  2OKD A;  3T70 A;  3TSL A;  2D4M A;  3TP1 A;  2Y1T A;  3TPW A;  2XY3 A;  3TTA A;  2WE2 A;  3TPS A;  5ECT A;  2OKE A;  1PKJ A;  3MDX A;  1F7Q A;  2HQU A;  2PC5 A;  1PKK A;  3C2T A;  3HZA A;  4DHK A;  3MBQ A;  3TQZ A;  3ZF2 A;  4AOO A;  3F4F A;  3TRL A;  3ECY A;  3T60 A;  4GV8 A;  5CCO A;  1DUP A;  2HRM A;  2R9Q A;  1XS4 A;  1DUC A;  1Q5H A;  4WRK A;  2PY4 A;  3ZF1 A;  2D4L A;  2HXD A;  3TQ3 A;  1SYL A;  2OL0 A;  3ZF4 A;  1DUT A;  1SLH A;  3CA9 A;  3T6Y A;  3LQW A;  2D4N A;  2XCD A;  3C3I A;  3ARN A;  5F9K A;  2QXX A;  1F7D A;  4LHR A;  3TQ4 A;  2WE1 A;  3ZF5 A;  3EHW A;  2ZDC A;  1F7K A;  2WE0 A;  1SNF A;  1SEH A;  4OOP A;  3T64 A;  3TS6 A;  2BT1 A;  5CCT A;  1VYQ A;  1DUN A;  3H6D A;  1EU5 A;  1F7N A;  2YZJ A;  3ZEZ A;  2WE3 A;  4B0H A;  3TQ5 A;  1MQ7 A;  2QLP A;  2J4Q A;  2XCE A;  2Y8C A;  2OKB A;  1EUW A;  1SJN A;  2HXB A;  4XJC A;  3KM3 A;  1SMC A;  4GCY A;  1RN8 A;  2J4H A;  1SM8 A;  1SIX A;  1DUD A;  2XX6 A;  3ZF3 A;  4AOZ A;  1F7O A;  3H6X A;  2BSY A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.