The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
144
|
sequence length |
338
|
structure length |
338
|
Chain Sequence |
MQVTHSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDPVSDGFEEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHANTAKLAQHWGDKNLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKITMPAHLMYDGSDELLFKHFTAVAQRVGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQEYVCELGPKIRRLEERAQGRAKEAPTMPFSWIFDRQVKL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The Crystal Structure of the Ivy {Delta}4-16:0-Acp Desaturase Reveals Structural Details of the Oxidized Active Site and Potential Determinants of Regioselectivity.
pubmed doi rcsb |
| molecule keywords |
PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DES
|
| molecule tags |
Oxidoreductase
|
| source organism |
Hedera helix
|
| total genus |
144
|
| structure length |
338
|
| sequence length |
338
|
| ec nomenclature |
ec
1.14.99.6: Transferred entry: 1.14.19.2. |
| pdb deposition date | 2007-03-15 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Ribonucleotide Reductase, subunit A | Ribonucleotide Reductase, subunit A |
#chains in the Genus database with same CATH superfamily 1T0R A; 5CNT E; 1SYY A; 3Q1G A; 4V0J A; 3EE4 A; 1PIM A; 1R65 A; 4BMT A; 5DCS A; 1MHZ D; 1T0S B; 1UZR A; 1W69 A; 1FZ7 C; 1XU3 C; 2UW1 B; 3DHH A; 4BMQ A; 1RSV A; 4M1I A; 4GAM B; 1ZA0 A; 1YFD A; 1RIB A; 1MHY B; 1T0Q B; 1H0N A; 1FZ1 C; 1FZ0 C; 1XU5 A; 1FZ3 A; 1SMQ A; 2UW2 A; 5CNV E; 3N3B A; 3N1Z B; 3I5J A; 1FZH A; 4XB9 A; 4AC8 A; 3VPM A; 4HR0 A; 4P1B B; 3RN9 A; 2BQ1 I; 3Q3N B; 3N37 A; 3I63 A; 5DCO A; 1JK0 A; 1FZ6 A; 3GE8 B; 1FZ9 C; 1XU5 C; 3DHI A; 1KGP A; 1MTY D; 3N3A A; 3Q3M B; 3N1X A; 3RI7 B; 3Q3O A; 1FZ3 C; 1FZ0 A; 5CI2 A; 2ALX A; 3RNE A; 2RDB B; 1FZ4 A; 3N20 B; 3PM5 A; 1PJ1 A; 1FZH C; 3OLJ A; 1XMF A; 3MJO A; 3Q14 A; 1XVG A; 3VPO A; 2INN A; 1XVD A; 3GE3 A; 2O1Z A; 3PER A; 1FZ8 A; 1PFR A; 3CHT A; 1FZ6 C; 2UW1 A; 4P1C A; 1FZ2 A; 1RNR A; 1FZ9 A; 2IND B; 1JQC A; 4GAM A; 1PIY A; 3RNF B; 1FZ4 C; 3N39 A; 3N1Y B; 4HR5 A; 4BMP A; 5DCR A; 3VPN A; 1XMF C; 2XZ0 A; 1MMO D; 1XVG C; 4M1H A; 3U52 A; 2INN C; 1XVD C; 3RNG B; 1T0R B; 4BMU A; 1FZ8 C; 1H0O A; 1MTY B; 3DHG A; 3N1Z A; 1MRR A; 1PIZ A; 1PIU A; 3DHH B; 3RMK B; 1FZ2 C; 2XOF A; 2INC A; 3Q3N A; 1OQ9 A; 3Q2A B; 1XIK A; 5CNU E; 3GE8 A; 1XMG A; 5CNS E; 3RNB B; 4D8G A; 5HYG A; 2P1I A; 3Q3M A; 3U52 C; 1RSR A; 1FZI A; 1PM2 A; 3N20 A; 1BIQ B; 2R2F A; 3RNA B; 1XMH A; 1XVE A; 1T0S A; 3CHU A; 4D8F A; 1OQB A; 2JCD A; 3RN9 B; 1XSM A; 1MMO B; 1KGN A; 1JK0 B; 1XMG C; 1AV8 A; 2INP A; 3RNC B; 5CI3 A; 4DJN A; 1W68 A; 1T0Q A; 1XVF A; 3Q3O B; 5CI0 A; 1FZ5 A; 3RNE B; 3RNF A; 1FZI C; 3N1Y A; 1XMH C; 1XVE C; 4M1F A; 1JPR A; 3RNG A; 3GE3 B; 4XBW A; 4P1B A; 1KGO A; 3RMK A; 4P1C B; 2INP C; 1PJ0 A; 2RCC A; 1XVB C; 1XVF C; 4XBV A; 1SMS A; 1FZ5 C; 3Q2A A; 4HR4 A; 3RI7 A; 2ANI A; 1AFR A; 2RDB A; 1XVC A; 3CHI A; 3RNB A; 4BMO A; 1FYZ A; 3PF7 A; 1OQU A; 1OQ4 A; 3I5J B; 3DHZ A; 5EKB A; 1MHY D; 3DHG B; 1BIQ A; 3RNA A; 1OQ7 A; 3I63 B; 5CI4 A; 3N38 A; 5CI1 A; 3HF1 A; 1XU3 A; 1FZ7 A; 3DHI B; 2INC B; 2VUX A; 3N1X B; 2IND A; 1XVB A; 3CHH A; 5HYH A; 4BMR A; 4N83 A; 1MXR A; 1XVC C; 2J2F A; 4DR0 A; 2XZ1 A; 2AV8 A; 1FYZ C; 3RNC A; 4ERM E; 1R2F A; 1FZ1 A; 3Q14 B; 1MHZ B; #chains in the Genus database with same CATH topology 1T0R A; 5CNT E; 1SYY A; 3Q1G A; 4V0J A; 3EE4 A; 1PIM A; 1R65 A; 4BMT A; 5DCS A; 1MHZ D; 1T0S B; 1UZR A; 1W69 A; 1FZ7 C; 1XU3 C; 2UW1 B; 3DHH A; 4BMQ A; 1RSV A; 4M1I A; 4GAM B; 1ZA0 A; 1YFD A; 1RIB A; 1MHY B; 1T0Q B; 1H0N A; 1FZ1 C; 1FZ0 C; 1XU5 A; 1FZ3 A; 1SMQ A; 2UW2 A; 5CNV E; 3N3B A; 3N1Z B; 3I5J A; 1FZH A; 4XB9 A; 4AC8 A; 3VPM A; 4HR0 A; 4P1B B; 3RN9 A; 2BQ1 I; 3Q3N B; 3N37 A; 3I63 A; 5DCO A; 1JK0 A; 1FZ6 A; 3GE8 B; 1FZ9 C; 1XU5 C; 3DHI A; 1KGP A; 1MTY D; 3N3A A; 3Q3M B; 3N1X A; 3RI7 B; 3Q3O A; 1FZ3 C; 1FZ0 A; 5CI2 A; 2ALX A; 3RNE A; 2RDB B; 1FZ4 A; 3N20 B; 3PM5 A; 1PJ1 A; 1FZH C; 3OLJ A; 1XMF A; 3MJO A; 3Q14 A; 1XVG A; 3VPO A; 2INN A; 1XVD A; 3GE3 A; 2O1Z A; 3PER A; 1FZ8 A; 1PFR A; 3CHT A; 1FZ6 C; 2UW1 A; 4P1C A; 1FZ2 A; 1RNR A; 1FZ9 A; 2IND B; 1JQC A; 4GAM A; 1PIY A; 3RNF B; 1FZ4 C; 3N39 A; 3N1Y B; 4HR5 A; 4BMP A; 5DCR A; 3VPN A; 1XMF C; 2XZ0 A; 1MMO D; 1XVG C; 4M1H A; 3U52 A; 2INN C; 1XVD C; 3RNG B; 1T0R B; 4BMU A; 1FZ8 C; 1H0O A; 1MTY B; 3DHG A; 3N1Z A; 1MRR A; 1PIZ A; 1PIU A; 3DHH B; 3RMK B; 1FZ2 C; 2XOF A; 2INC A; 3Q3N A; 1OQ9 A; 3Q2A B; 1XIK A; 5CNU E; 3GE8 A; 1XMG A; 5CNS E; 3RNB B; 4D8G A; 5HYG A; 2P1I A; 3Q3M A; 3U52 C; 1RSR A; 1FZI A; 1PM2 A; 3N20 A; 1BIQ B; 2R2F A; 3RNA B; 1XMH A; 1XVE A; 1T0S A; 3CHU A; 4D8F A; 1OQB A; 2JCD A; 3RN9 B; 1XSM A; 1MMO B; 1KGN A; 1JK0 B; 1XMG C; 1AV8 A; 2INP A; 3RNC B; 5CI3 A; 4DJN A; 1W68 A; 1T0Q A; 1XVF A; 3Q3O B; 5CI0 A; 1FZ5 A; 3RNE B; 3RNF A; 1FZI C; 3N1Y A; 1XMH C; 1XVE C; 4M1F A; 1JPR A; 3RNG A; 3GE3 B; 4XBW A; 4P1B A; 1KGO A; 3RMK A; 4P1C B; 2INP C; 1PJ0 A; 2RCC A; 1XVB C; 1XVF C; 4XBV A; 1SMS A; 1FZ5 C; 3Q2A A; 4HR4 A; 3RI7 A; 2ANI A; 1AFR A; 2RDB A; 1XVC A; 3CHI A; 3RNB A; 4BMO A; 1FYZ A; 3PF7 A; 1OQU A; 1OQ4 A; 3I5J B; 3DHZ A; 5EKB A; 1MHY D; 3DHG B; 1BIQ A; 3RNA A; 1OQ7 A; 3I63 B; 5CI4 A; 3N38 A; 5CI1 A; 3HF1 A; 1XU3 A; 1FZ7 A; 3DHI B; 2INC B; 2VUX A; 3N1X B; 2IND A; 1XVB A; 3CHH A; 5HYH A; 4BMR A; 4N83 A; 1MXR A; 1XVC C; 2J2F A; 4DR0 A; 2XZ1 A; 2AV8 A; 1FYZ C; 3RNC A; 4ERM E; 1R2F A; 1FZ1 A; 3Q14 B; 1MHZ B; #chains in the Genus database with same CATH homology 1T0R A; 5CNT E; 1SYY A; 3Q1G A; 4V0J A; 3EE4 A; 1PIM A; 1R65 A; 4BMT A; 5DCS A; 1MHZ D; 1T0S B; 1UZR A; 1W69 A; 1FZ7 C; 1XU3 C; 2UW1 B; 3DHH A; 4BMQ A; 1RSV A; 4M1I A; 4GAM B; 1ZA0 A; 1YFD A; 1RIB A; 1MHY B; 1T0Q B; 1H0N A; 1FZ1 C; 1FZ0 C; 1XU5 A; 1FZ3 A; 1SMQ A; 2UW2 A; 5CNV E; 3N3B A; 3N1Z B; 3I5J A; 1FZH A; 4XB9 A; 4AC8 A; 3VPM A; 4HR0 A; 4P1B B; 3RN9 A; 2BQ1 I; 3Q3N B; 3N37 A; 3I63 A; 5DCO A; 1JK0 A; 1FZ6 A; 3GE8 B; 1FZ9 C; 1XU5 C; 3DHI A; 1KGP A; 1MTY D; 3N3A A; 3Q3M B; 3N1X A; 3RI7 B; 3Q3O A; 1FZ3 C; 1FZ0 A; 5CI2 A; 2ALX A; 3RNE A; 2RDB B; 1FZ4 A; 3N20 B; 3PM5 A; 1PJ1 A; 1FZH C; 3OLJ A; 1XMF A; 3MJO A; 3Q14 A; 1XVG A; 3VPO A; 2INN A; 1XVD A; 3GE3 A; 2O1Z A; 3PER A; 1FZ8 A; 1PFR A; 3CHT A; 1FZ6 C; 2UW1 A; 4P1C A; 1FZ2 A; 1RNR A; 1FZ9 A; 2IND B; 1JQC A; 4GAM A; 1PIY A; 3RNF B; 1FZ4 C; 3N39 A; 3N1Y B; 4HR5 A; 4BMP A; 5DCR A; 3VPN A; 1XMF C; 2XZ0 A; 1MMO D; 1XVG C; 4M1H A; 3U52 A; 2INN C; 1XVD C; 3RNG B; 1T0R B; 4BMU A; 1FZ8 C; 1H0O A; 1MTY B; 3DHG A; 3N1Z A; 1MRR A; 1PIZ A; 1PIU A; 3DHH B; 3RMK B; 1FZ2 C; 2XOF A; 2INC A; 3Q3N A; 1OQ9 A; 3Q2A B; 1XIK A; 5CNU E; 3GE8 A; 1XMG A; 5CNS E; 3RNB B; 4D8G A; 5HYG A; 2P1I A; 3Q3M A; 3U52 C; 1RSR A; 1FZI A; 1PM2 A; 3N20 A; 1BIQ B; 2R2F A; 3RNA B; 1XMH A; 1XVE A; 1T0S A; 3CHU A; 4D8F A; 1OQB A; 2JCD A; 3RN9 B; 1XSM A; 1MMO B; 1KGN A; 1JK0 B; 1XMG C; 1AV8 A; 2INP A; 3RNC B; 5CI3 A; 4DJN A; 1W68 A; 1T0Q A; 1XVF A; 3Q3O B; 5CI0 A; 1FZ5 A; 3RNE B; 3RNF A; 1FZI C; 3N1Y A; 1XMH C; 1XVE C; 4M1F A; 1JPR A; 3RNG A; 3GE3 B; 4XBW A; 4P1B A; 1KGO A; 3RMK A; 4P1C B; 2INP C; 1PJ0 A; 2RCC A; 1XVB C; 1XVF C; 4XBV A; 1SMS A; 1FZ5 C; 3Q2A A; 4HR4 A; 3RI7 A; 2ANI A; 1AFR A; 2RDB A; 1XVC A; 3CHI A; 3RNB A; 4BMO A; 1FYZ A; 3PF7 A; 1OQU A; 1OQ4 A; 3I5J B; 3DHZ A; 5EKB A; 1MHY D; 3DHG B; 1BIQ A; 3RNA A; 1OQ7 A; 3I63 B; 5CI4 A; 3N38 A; 5CI1 A; 3HF1 A; 1XU3 A; 1FZ7 A; 3DHI B; 2INC B; 2VUX A; 3N1X B; 2IND A; 1XVB A; 3CHH A; 5HYH A; 4BMR A; 4N83 A; 1MXR A; 1XVC C; 2J2F A; 4DR0 A; 2XZ1 A; 2AV8 A; 1FYZ C; 3RNC A; 4ERM E; 1R2F A; 1FZ1 A; 3Q14 B; 1MHZ B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
