2V43 | Genus

Total Genus 65

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	65
sequence length	289
structure length	261
Chain Sequence	ASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPSWTPTWLPQGFSEVSRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 261 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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261 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The Structure of Rseb: A Sensor in Periplasmic Stress Response of E. Coli. pubmed doi rcsb
molecule keywords	SIGMA-E FACTOR REGULATORY PROTEIN RSEB
molecule tags	Regulator
source organism	Escherichia coli
total genus	65
structure length	261
sequence length	289
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2007-06-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03888	MucB_RseB	MucB/RseB N-terminal domain
A	PF17188	MucB_RseB_C	MucB/RseB C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.50.20.10	Mainly Beta	Clam	outer membrane lipoprotein receptor (LolB), chain A	Lipoprotein localisation LolA/LolB/LppX	2v43A01

1IWMA 2YZYA 4KI3A 4Z48A 2ZPDA 4MXTA 1IWLA 3BUUA 3BK5A 3KSNA 2ZPCA 3WJVA 3WJTA 1IWNA 2W7QA 3WJUA 2V42A 1UA8A 2V43A 3M4WA 2P4BA
chains in the Genus database with same CATH superfamily

2ZF4A 4ZRAA 1IWMA 4EG9A 3MHAA 2YZYA 3BMZA 3MH8A 4EGDA 4KI3A 4Z48A 2ZPDA 4MXTA 1IWLA 3BUUA 3BK5A 3KSNA 3MH9A 2ZPCA 3WJVA 2BYOA 3WJTA 4QA8A 1IWNA 2ZF3A 2W7QA 3WJUA 2V42A 1UA8A 2V43A 3M4WA 2P4BA
chains in the Genus database with same CATH topology

1IWMA 2YZYA 4KI3A 4Z48A 2ZPDA 4MXTA 1IWLA 3BUUA 3BK5A 3KSNA 2ZPCA 3WJVA 3WJTA 1IWNA 2W7QA 3WJUA 2V42A 1UA8A 2V43A 3M4WA 2P4BA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1IWM A;  2YZY A;  4KI3 A;  4Z48 A;  2ZPD A;  4MXT A;  1IWL A;  3BUU A;  3BK5 A;  3KSN A;  2ZPC A;  3WJV A;  3WJT A;  1IWN A;  2W7Q A;  3WJU A;  2V42 A;  1UA8 A;  2V43 A;  3M4W A;  2P4B A; 
#chains in the Genus database with same CATH topology
 2ZF4 A;  4ZRA A;  1IWM A;  4EG9 A;  3MHA A;  2YZY A;  3BMZ A;  3MH8 A;  4EGD A;  4KI3 A;  4Z48 A;  2ZPD A;  4MXT A;  1IWL A;  3BUU A;  3BK5 A;  3KSN A;  3MH9 A;  2ZPC A;  3WJV A;  2BYO A;  3WJT A;  4QA8 A;  1IWN A;  2ZF3 A;  2W7Q A;  3WJU A;  2V42 A;  1UA8 A;  2V43 A;  3M4W A;  2P4B A; 
#chains in the Genus database with same CATH homology
 1IWM A;  2YZY A;  4KI3 A;  4Z48 A;  2ZPD A;  4MXT A;  1IWL A;  3BUU A;  3BK5 A;  3KSN A;  2ZPC A;  3WJV A;  3WJT A;  1IWN A;  2W7Q A;  3WJU A;  2V42 A;  1UA8 A;  2V43 A;  3M4W A;  2P4B A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2V43A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations