2VFWA

Rv1086 native
Total Genus 89

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
227
structure length
227
Chain Sequence
DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVEEICAPANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS5 (208-211)TVIII1 (32-35)S1 (34-38)TI'1 (212-215)AH1 (42-49)S3 (119-123)TVIII2 (51-54)3H3 (126-128)AH2 (54-75)AH3 (94-112)S2 (79-86)3H1 (88-91)AH4 (131-143)AH5 (160-178)AH7 (191-196)TVIII3 (145-148)S4 (151-158)TII1 (200-203)AH6 (182-188)TI1 (198-201)TI3 (224-227)TIV2 (220-223)TVIII5 (206-209)TI2 (223-226)TIV3 (222-225)3H2 (114-116)TVIII4 (148-151)Updating...
connected with : NaN
publication title The structural basis of chain length control in Rv1086.
pubmed doi rcsb
molecule keywords SHORT-CHAIN Z-ISOPRENYL DIPHOSPHATE SYNTHETASE
molecule tags Transferase
source organism Mycobacterium tuberculosis
total genus 89
structure length 227
sequence length 227
chains with identical sequence B
ec nomenclature ec 2.5.1.68: (2Z,6E)-farnesyl diphosphate synthase.
pdb deposition date 2007-11-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1180.10 Alpha Beta 3-Layer(aba) Sandwich Undecaprenyl pyrophosphate synthetase Decaprenyl diphosphate synthase-like 2vfwA00
3SGTA 1V7UA 2E9DA 4U82A 4CMVA 5HXOA 4Q9OA 4CMWA 3WYJA 4H2JA 3TH8A 2D2RA 4H2OA 5CQBA 3WQKA 2VG3A 3QASA 5HXNA 5HC7A 4H38A 5KH5A 5HXTA 1F75A 2DTNA 3WQMA 1X06A 4H2MA 5KH2A 3SGXA 2VFWA 2E9CA 2E98A 5HC8A 3WYIA 3WQNA 2E99A 5CQJA 1X08A 4H3AA 1JP3A 1X07A 2E9AA 2VG4A 2VG1A 4KT8A 3SH0A 5HXPA 4ONCA 1UEHA 5HC6A 2VG2A 3SGVA 5KH4A 2VG0A 1X09A 4Q9MA 3UGSA 4H3CA 4CMXA 5HXQA 3WQLA 4H8EA
chains in the Genus database with same CATH superfamily
3SGTA 1V7UA 2E9DA 4U82A 4CMVA 5HXOA 4Q9OA 4CMWA 3WYJA 4H2JA 3TH8A 2D2RA 4H2OA 5CQBA 3WQKA 2VG3A 3QASA 5HXNA 5HC7A 4H38A 5KH5A 5HXTA 1F75A 2DTNA 3WQMA 1X06A 4H2MA 5KH2A 3SGXA 2VFWA 2E9CA 2E98A 5HC8A 3WYIA 3WQNA 2E99A 5CQJA 1X08A 4H3AA 1JP3A 1X07A 2E9AA 2VG4A 2VG1A 4KT8A 3SH0A 5HXPA 4ONCA 1UEHA 5HC6A 2VG2A 3SGVA 5KH4A 2VG0A 1X09A 4Q9MA 3UGSA 4H3CA 4CMXA 5HXQA 3WQLA 4H8EA
chains in the Genus database with same CATH topology
3SGTA 1V7UA 2E9DA 4U82A 4CMVA 5HXOA 4Q9OA 4CMWA 3WYJA 4H2JA 3TH8A 2D2RA 4H2OA 5CQBA 3WQKA 2VG3A 3QASA 5HXNA 5HC7A 4H38A 5KH5A 5HXTA 1F75A 2DTNA 3WQMA 1X06A 4H2MA 5KH2A 3SGXA 2VFWA 2E9CA 2E98A 5HC8A 3WYIA 3WQNA 2E99A 5CQJA 1X08A 4H3AA 1JP3A 1X07A 2E9AA 2VG4A 2VG1A 4KT8A 3SH0A 5HXPA 4ONCA 1UEHA 5HC6A 2VG2A 3SGVA 5KH4A 2VG0A 1X09A 4Q9MA 3UGSA 4H3CA 4CMXA 5HXQA 3WQLA 4H8EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SGT A;  1V7U A;  2E9D A;  4U82 A;  4CMV A;  5HXO A;  4Q9O A;  4CMW A;  3WYJ A;  4H2J A;  3TH8 A;  2D2R A;  4H2O A;  5CQB A;  3WQK A;  2VG3 A;  3QAS A;  5HXN A;  5HC7 A;  4H38 A;  5KH5 A;  5HXT A;  1F75 A;  2DTN A;  3WQM A;  1X06 A;  4H2M A;  5KH2 A;  3SGX A;  2VFW A;  2E9C A;  2E98 A;  5HC8 A;  3WYI A;  3WQN A;  2E99 A;  5CQJ A;  1X08 A;  4H3A A;  1JP3 A;  1X07 A;  2E9A A;  2VG4 A;  2VG1 A;  4KT8 A;  3SH0 A;  5HXP A;  4ONC A;  1UEH A;  5HC6 A;  2VG2 A;  3SGV A;  5KH4 A;  2VG0 A;  1X09 A;  4Q9M A;  3UGS A;  4H3C A;  4CMX A;  5HXQ A;  3WQL A;  4H8E A; 
#chains in the Genus database with same CATH topology
 3SGT A;  1V7U A;  2E9D A;  4U82 A;  4CMV A;  5HXO A;  4Q9O A;  4CMW A;  3WYJ A;  4H2J A;  3TH8 A;  2D2R A;  4H2O A;  5CQB A;  3WQK A;  2VG3 A;  3QAS A;  5HXN A;  5HC7 A;  4H38 A;  5KH5 A;  5HXT A;  1F75 A;  2DTN A;  3WQM A;  1X06 A;  4H2M A;  5KH2 A;  3SGX A;  2VFW A;  2E9C A;  2E98 A;  5HC8 A;  3WYI A;  3WQN A;  2E99 A;  5CQJ A;  1X08 A;  4H3A A;  1JP3 A;  1X07 A;  2E9A A;  2VG4 A;  2VG1 A;  4KT8 A;  3SH0 A;  5HXP A;  4ONC A;  1UEH A;  5HC6 A;  2VG2 A;  3SGV A;  5KH4 A;  2VG0 A;  1X09 A;  4Q9M A;  3UGS A;  4H3C A;  4CMX A;  5HXQ A;  3WQL A;  4H8E A; 
#chains in the Genus database with same CATH homology
 3SGT A;  1V7U A;  2E9D A;  4U82 A;  4CMV A;  5HXO A;  4Q9O A;  4CMW A;  3WYJ A;  4H2J A;  3TH8 A;  2D2R A;  4H2O A;  5CQB A;  3WQK A;  2VG3 A;  3QAS A;  5HXN A;  5HC7 A;  4H38 A;  5KH5 A;  5HXT A;  1F75 A;  2DTN A;  3WQM A;  1X06 A;  4H2M A;  5KH2 A;  3SGX A;  2VFW A;  2E9C A;  2E98 A;  5HC8 A;  3WYI A;  3WQN A;  2E99 A;  5CQJ A;  1X08 A;  4H3A A;  1JP3 A;  1X07 A;  2E9A A;  2VG4 A;  2VG1 A;  4KT8 A;  3SH0 A;  5HXP A;  4ONC A;  1UEH A;  5HC6 A;  2VG2 A;  3SGV A;  5KH4 A;  2VG0 A;  1X09 A;  4Q9M A;  3UGS A;  4H3C A;  4CMX A;  5HXQ A;  3WQL A;  4H8E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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