2VG0A

Rv1086 citronellyl pyrophosphate complex
Total Genus 94

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
227
structure length
227
Chain Sequence
DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVEEICAPANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS5 (208-211)TVIII1 (32-35)S1 (34-38)TI'1 (212-215)AH1 (42-49)3H1 (87-91)S3 (119-123)TVIII2 (51-54)3H3 (126-128)AH2 (54-75)AH3 (94-112)S2 (79-86)AH4 (131-143)AH5 (160-178)AH7 (191-196)TVIII3 (145-148)S4 (151-158)TII1 (200-203)AH6 (182-187)TVIII5 (206-209)TI1 (198-201)TI3 (224-227)TIV2 (220-223)TI2 (223-226)TIV3 (222-225)O1 (38-40)3H2 (114-116)TVIII4 (148-151)Updating...
connected with : NaN
molecule tags Transferase
source organism Mycobacterium tuberculosis
publication title The structural basis of chain length control in Rv1086.
pubmed doi rcsb
molecule keywords SHORT-CHAIN Z-ISOPRENYL DIPHOSPHATE SYNTHETASE
total genus 94
structure length 227
sequence length 227
chains with identical sequence B
ec nomenclature ec 2.5.1.68: (2Z,6E)-farnesyl diphosphate synthase.
pdb deposition date 2007-11-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1180.10 Alpha Beta 3-Layer(aba) Sandwich Undecaprenyl pyrophosphate synthetase Decaprenyl diphosphate synthase-like 2vg0A00
4H2JA 5HXNA 3UGSA 2VG3A 5KH5A 4KT8A 3WQKA 2E9AA 2VG2A 5HC6A 4Q9OA 3SH0A 2VG0A 2E98A 2VG1A 3SGVA 4H38A 3TH8A 2E9DA 2D2RA 5KH2A 4H2OA 3SGTA 4CMWA 5KH4A 3WQMA 1JP3A 5HC7A 2DTNA 2VFWA 1UEHA 5HC8A 1X06A 4H2MA 3SGXA 1V7UA 3WYIA 4CMVA 2E99A 2VG4A 2E9CA 5CQJA 3QASA 4H8EA 4U82A 3WQLA 5HXQA 3WQNA 5CQBA 1X08A 1X09A 3WYJA 1F75A 4ONCA 4CMXA 1X07A 4Q9MA 5HXPA 4H3CA 5HXTA 4H3AA 5HXOA
chains in the Genus database with same CATH superfamily
4H2JA 5HXNA 3UGSA 2VG3A 5KH5A 4KT8A 3WQKA 2E9AA 2VG2A 5HC6A 4Q9OA 3SH0A 2VG0A 2E98A 2VG1A 3SGVA 4H38A 3TH8A 2E9DA 2D2RA 5KH2A 4H2OA 3SGTA 4CMWA 5KH4A 3WQMA 1JP3A 5HC7A 2DTNA 2VFWA 1UEHA 5HC8A 1X06A 4H2MA 3SGXA 1V7UA 3WYIA 4CMVA 2E99A 2VG4A 2E9CA 5CQJA 3QASA 4H8EA 4U82A 3WQLA 5HXQA 3WQNA 5CQBA 1X08A 1X09A 3WYJA 1F75A 4ONCA 4CMXA 1X07A 4Q9MA 5HXPA 4H3CA 5HXTA 4H3AA 5HXOA
chains in the Genus database with same CATH topology
4H2JA 5HXNA 3UGSA 2VG3A 5KH5A 4KT8A 3WQKA 2E9AA 2VG2A 5HC6A 4Q9OA 3SH0A 2VG0A 2E98A 2VG1A 3SGVA 4H38A 3TH8A 2E9DA 2D2RA 5KH2A 4H2OA 3SGTA 4CMWA 5KH4A 3WQMA 1JP3A 5HC7A 2DTNA 2VFWA 1UEHA 5HC8A 1X06A 4H2MA 3SGXA 1V7UA 3WYIA 4CMVA 2E99A 2VG4A 2E9CA 5CQJA 3QASA 4H8EA 4U82A 3WQLA 5HXQA 3WQNA 5CQBA 1X08A 1X09A 3WYJA 1F75A 4ONCA 4CMXA 1X07A 4Q9MA 5HXPA 4H3CA 5HXTA 4H3AA 5HXOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H2J A;  5HXN A;  3UGS A;  2VG3 A;  5KH5 A;  4KT8 A;  3WQK A;  2E9A A;  2VG2 A;  5HC6 A;  4Q9O A;  3SH0 A;  2VG0 A;  2E98 A;  2VG1 A;  3SGV A;  4H38 A;  3TH8 A;  2E9D A;  2D2R A;  5KH2 A;  4H2O A;  3SGT A;  4CMW A;  5KH4 A;  3WQM A;  1JP3 A;  5HC7 A;  2DTN A;  2VFW A;  1UEH A;  5HC8 A;  1X06 A;  4H2M A;  3SGX A;  1V7U A;  3WYI A;  4CMV A;  2E99 A;  2VG4 A;  2E9C A;  5CQJ A;  3QAS A;  4H8E A;  4U82 A;  3WQL A;  5HXQ A;  3WQN A;  5CQB A;  1X08 A;  1X09 A;  3WYJ A;  1F75 A;  4ONC A;  4CMX A;  1X07 A;  4Q9M A;  5HXP A;  4H3C A;  5HXT A;  4H3A A;  5HXO A; 
#chains in the Genus database with same CATH topology
 4H2J A;  5HXN A;  3UGS A;  2VG3 A;  5KH5 A;  4KT8 A;  3WQK A;  2E9A A;  2VG2 A;  5HC6 A;  4Q9O A;  3SH0 A;  2VG0 A;  2E98 A;  2VG1 A;  3SGV A;  4H38 A;  3TH8 A;  2E9D A;  2D2R A;  5KH2 A;  4H2O A;  3SGT A;  4CMW A;  5KH4 A;  3WQM A;  1JP3 A;  5HC7 A;  2DTN A;  2VFW A;  1UEH A;  5HC8 A;  1X06 A;  4H2M A;  3SGX A;  1V7U A;  3WYI A;  4CMV A;  2E99 A;  2VG4 A;  2E9C A;  5CQJ A;  3QAS A;  4H8E A;  4U82 A;  3WQL A;  5HXQ A;  3WQN A;  5CQB A;  1X08 A;  1X09 A;  3WYJ A;  1F75 A;  4ONC A;  4CMX A;  1X07 A;  4Q9M A;  5HXP A;  4H3C A;  5HXT A;  4H3A A;  5HXO A; 
#chains in the Genus database with same CATH homology
 4H2J A;  5HXN A;  3UGS A;  2VG3 A;  5KH5 A;  4KT8 A;  3WQK A;  2E9A A;  2VG2 A;  5HC6 A;  4Q9O A;  3SH0 A;  2VG0 A;  2E98 A;  2VG1 A;  3SGV A;  4H38 A;  3TH8 A;  2E9D A;  2D2R A;  5KH2 A;  4H2O A;  3SGT A;  4CMW A;  5KH4 A;  3WQM A;  1JP3 A;  5HC7 A;  2DTN A;  2VFW A;  1UEH A;  5HC8 A;  1X06 A;  4H2M A;  3SGX A;  1V7U A;  3WYI A;  4CMV A;  2E99 A;  2VG4 A;  2E9C A;  5CQJ A;  3QAS A;  4H8E A;  4U82 A;  3WQL A;  5HXQ A;  3WQN A;  5CQB A;  1X08 A;  1X09 A;  3WYJ A;  1F75 A;  4ONC A;  4CMX A;  1X07 A;  4Q9M A;  5HXP A;  4H3C A;  5HXT A;  4H3A A;  5HXO A; 
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similar chains in the pdb database (?% sequence similarity)

 
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