2VG2A

Rv2361 with ipp
Total Genus 106

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
106
sequence length
283
structure length
283
Chain Sequence
FPQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFGS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (20-23)AH1 (78-85)AH3 (129-153)TIV1 (28-31)TIV3 (42-45)S2 (52-53)TI2 (53-56)3H1 (64-66)TI6 (256-259)TVIII2 (68-71)S3 (70-74)TI5 (233-236)TI8 (259-262)O1 (74-76)TVIII3 (118-121)AH2 (89-110)TVIII6 (239-242)S7 (241-244)TI4 (181-184)S4 (114-118)TI3 (121-124)3H2 (124-126)S6 (187-192)3H3 (219-221)TII1 (163-166)TI'1 (245-248)AH6 (224-230)TVIII5 (231-234)TI'2 (251-254)TIV5 (253-256)TIV6 (255-258)S8 (263-266)3H4 (271-273)AH7 (276-288)AH4 (168-181)S5 (155-160)TVIII4 (185-188)TIV4 (192-195)AH5 (197-214)Updating...
connected with : NaN
publication title The structural basis of chain length control in Rv1086.
pubmed doi rcsb
molecule keywords UNDECAPRENYL PYROPHOSPHATE SYNTHETASE
molecule tags Transferase
source organism Mycobacterium tuberculosis
total genus 106
structure length 283
sequence length 283
chains with identical sequence B, C, D
ec nomenclature ec 2.5.1.86: Trans,polycis-decaprenyl diphosphate synthase.
pdb deposition date 2007-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01255 Prenyltransf Putative undecaprenyl diphosphate synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1180.10 Alpha Beta 3-Layer(aba) Sandwich Undecaprenyl pyrophosphate synthetase Decaprenyl diphosphate synthase-like 2vg2A01
4ONCA 5CQJA 1JP3A 4H2JA 3SGXA 3SH0A 5HXOA 5HXPA 2VG2A 3UGSA 2VG4A 3SGVA 1V7UA 3SGTA 1F75A 2E9CA 4CMVA 3WYJA 3WQLA 5CQBA 5KH4A 4H2MA 5KH5A 1X09A 4U82A 4CMWA 3TH8A 2VG3A 3WQNA 2VFWA 4H2OA 2DTNA 5HXNA 4KT8A 5HC6A 4Q9MA 5HXQA 5HC8A 3QASA 2E99A 4H3AA 1X08A 2VG1A 2E9DA 2E9AA 4H3CA 5HC7A 4CMXA 4H8EA 3WQMA 1X06A 5HXTA 2VG0A 3WQKA 4H38A 4Q9OA 5KH2A 2D2RA 1X07A 1UEHA 2E98A 3WYIA
chains in the Genus database with same CATH superfamily
4ONCA 5CQJA 1JP3A 4H2JA 3SGXA 3SH0A 5HXOA 5HXPA 2VG2A 3UGSA 2VG4A 3SGVA 1V7UA 3SGTA 1F75A 2E9CA 4CMVA 3WYJA 3WQLA 5CQBA 5KH4A 4H2MA 5KH5A 1X09A 4U82A 4CMWA 3TH8A 2VG3A 3WQNA 2VFWA 4H2OA 2DTNA 5HXNA 4KT8A 5HC6A 4Q9MA 5HXQA 5HC8A 3QASA 2E99A 4H3AA 1X08A 2VG1A 2E9DA 2E9AA 4H3CA 5HC7A 4CMXA 4H8EA 3WQMA 1X06A 5HXTA 2VG0A 3WQKA 4H38A 4Q9OA 5KH2A 2D2RA 1X07A 1UEHA 2E98A 3WYIA
chains in the Genus database with same CATH topology
4ONCA 5CQJA 1JP3A 4H2JA 3SGXA 3SH0A 5HXOA 5HXPA 2VG2A 3UGSA 2VG4A 3SGVA 1V7UA 3SGTA 1F75A 2E9CA 4CMVA 3WYJA 3WQLA 5CQBA 5KH4A 4H2MA 5KH5A 1X09A 4U82A 4CMWA 3TH8A 2VG3A 3WQNA 2VFWA 4H2OA 2DTNA 5HXNA 4KT8A 5HC6A 4Q9MA 5HXQA 5HC8A 3QASA 2E99A 4H3AA 1X08A 2VG1A 2E9DA 2E9AA 4H3CA 5HC7A 4CMXA 4H8EA 3WQMA 1X06A 5HXTA 2VG0A 3WQKA 4H38A 4Q9OA 5KH2A 2D2RA 1X07A 1UEHA 2E98A 3WYIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ONC A;  5CQJ A;  1JP3 A;  4H2J A;  3SGX A;  3SH0 A;  5HXO A;  5HXP A;  2VG2 A;  3UGS A;  2VG4 A;  3SGV A;  1V7U A;  3SGT A;  1F75 A;  2E9C A;  4CMV A;  3WYJ A;  3WQL A;  5CQB A;  5KH4 A;  4H2M A;  5KH5 A;  1X09 A;  4U82 A;  4CMW A;  3TH8 A;  2VG3 A;  3WQN A;  2VFW A;  4H2O A;  2DTN A;  5HXN A;  4KT8 A;  5HC6 A;  4Q9M A;  5HXQ A;  5HC8 A;  3QAS A;  2E99 A;  4H3A A;  1X08 A;  2VG1 A;  2E9D A;  2E9A A;  4H3C A;  5HC7 A;  4CMX A;  4H8E A;  3WQM A;  1X06 A;  5HXT A;  2VG0 A;  3WQK A;  4H38 A;  4Q9O A;  5KH2 A;  2D2R A;  1X07 A;  1UEH A;  2E98 A;  3WYI A; 
#chains in the Genus database with same CATH topology
 4ONC A;  5CQJ A;  1JP3 A;  4H2J A;  3SGX A;  3SH0 A;  5HXO A;  5HXP A;  2VG2 A;  3UGS A;  2VG4 A;  3SGV A;  1V7U A;  3SGT A;  1F75 A;  2E9C A;  4CMV A;  3WYJ A;  3WQL A;  5CQB A;  5KH4 A;  4H2M A;  5KH5 A;  1X09 A;  4U82 A;  4CMW A;  3TH8 A;  2VG3 A;  3WQN A;  2VFW A;  4H2O A;  2DTN A;  5HXN A;  4KT8 A;  5HC6 A;  4Q9M A;  5HXQ A;  5HC8 A;  3QAS A;  2E99 A;  4H3A A;  1X08 A;  2VG1 A;  2E9D A;  2E9A A;  4H3C A;  5HC7 A;  4CMX A;  4H8E A;  3WQM A;  1X06 A;  5HXT A;  2VG0 A;  3WQK A;  4H38 A;  4Q9O A;  5KH2 A;  2D2R A;  1X07 A;  1UEH A;  2E98 A;  3WYI A; 
#chains in the Genus database with same CATH homology
 4ONC A;  5CQJ A;  1JP3 A;  4H2J A;  3SGX A;  3SH0 A;  5HXO A;  5HXP A;  2VG2 A;  3UGS A;  2VG4 A;  3SGV A;  1V7U A;  3SGT A;  1F75 A;  2E9C A;  4CMV A;  3WYJ A;  3WQL A;  5CQB A;  5KH4 A;  4H2M A;  5KH5 A;  1X09 A;  4U82 A;  4CMW A;  3TH8 A;  2VG3 A;  3WQN A;  2VFW A;  4H2O A;  2DTN A;  5HXN A;  4KT8 A;  5HC6 A;  4Q9M A;  5HXQ A;  5HC8 A;  3QAS A;  2E99 A;  4H3A A;  1X08 A;  2VG1 A;  2E9D A;  2E9A A;  4H3C A;  5HC7 A;  4CMX A;  4H8E A;  3WQM A;  1X06 A;  5HXT A;  2VG0 A;  3WQK A;  4H38 A;  4Q9O A;  5KH2 A;  2D2R A;  1X07 A;  1UEH A;  2E98 A;  3WYI A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.