2VG4A

Rv2361 native
Total Genus 88

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
284
structure length
284
Chain Sequence
FPQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFGSA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH1 (78-84)TI1 (20-23)AH3 (129-153)TIV3 (42-45)EMPTYTI2 (53-56)AH7 (276-288)TI3 (63-66)TVIII3 (231-234)TI10 (256-259)S3 (70-74)TI4 (64-67)TI9 (233-236)TVIII2 (68-71)TIV11 (259-262)O1 (117-119)TIV5 (181-184)S4 (114-118)TI5 (121-124)TI6 (123-126)TI7 (124-127)TIV4 (122-125)AH4 (168-181)S5 (155-160)TI8 (218-221)TII1 (163-166)S6 (187-192)TI'1 (245-248)AH5 (197-214)AH6 (224-229)TI'2 (251-254)TIV9 (253-256)S7 (241-245)S8 (263-267)TIV10 (255-258)3H1 (271-273)AH2 (89-110)TIV7 (192-195)TIV6 (185-188)Updating...
connected with : NaN
publication title The structural basis of chain length control in Rv1086.
pubmed doi rcsb
molecule keywords UNDECAPRENYL PYROPHOSPHATE SYNTHETASE
molecule tags Transferase
source organism Mycobacterium tuberculosis
total genus 88
structure length 284
sequence length 284
chains with identical sequence B, C, D
ec nomenclature ec 2.5.1.86: Trans,polycis-decaprenyl diphosphate synthase.
pdb deposition date 2007-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01255 Prenyltransf Putative undecaprenyl diphosphate synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1180.10 Alpha Beta 3-Layer(aba) Sandwich Undecaprenyl pyrophosphate synthetase Decaprenyl diphosphate synthase-like 2vg4A01
5HXQA 5HXTA 2E9AA 3WQKA 4Q9OA 3WQNA 5HC8A 2E98A 2D2RA 2VG1A 4ONCA 4H2OA 4U82A 5CQJA 3SGXA 5HXPA 3WYJA 5HXNA 2VFWA 1UEHA 2DTNA 1X07A 1X06A 5HC6A 2E99A 1F75A 4CMWA 5HXOA 1V7UA 4Q9MA 3UGSA 5CQBA 4H8EA 3SGVA 3WQLA 2VG2A 4H3AA 5KH5A 4CMXA 1X08A 4CMVA 3WQMA 3SH0A 5HC7A 1X09A 4H2JA 2VG0A 4H2MA 2VG3A 1JP3A 4H3CA 3SGTA 3TH8A 5KH2A 4H38A 5KH4A 3WYIA 2VG4A 2E9DA 2E9CA 3QASA 4KT8A
chains in the Genus database with same CATH superfamily
5HXQA 5HXTA 2E9AA 3WQKA 4Q9OA 3WQNA 5HC8A 2E98A 2D2RA 2VG1A 4ONCA 4H2OA 4U82A 5CQJA 3SGXA 5HXPA 3WYJA 5HXNA 2VFWA 1UEHA 2DTNA 1X07A 1X06A 5HC6A 2E99A 1F75A 4CMWA 5HXOA 1V7UA 4Q9MA 3UGSA 5CQBA 4H8EA 3SGVA 3WQLA 2VG2A 4H3AA 5KH5A 4CMXA 1X08A 4CMVA 3WQMA 3SH0A 5HC7A 1X09A 4H2JA 2VG0A 4H2MA 2VG3A 1JP3A 4H3CA 3SGTA 3TH8A 5KH2A 4H38A 5KH4A 3WYIA 2VG4A 2E9DA 2E9CA 3QASA 4KT8A
chains in the Genus database with same CATH topology
5HXQA 5HXTA 2E9AA 3WQKA 4Q9OA 3WQNA 5HC8A 2E98A 2D2RA 2VG1A 4ONCA 4H2OA 4U82A 5CQJA 3SGXA 5HXPA 3WYJA 5HXNA 2VFWA 1UEHA 2DTNA 1X07A 1X06A 5HC6A 2E99A 1F75A 4CMWA 5HXOA 1V7UA 4Q9MA 3UGSA 5CQBA 4H8EA 3SGVA 3WQLA 2VG2A 4H3AA 5KH5A 4CMXA 1X08A 4CMVA 3WQMA 3SH0A 5HC7A 1X09A 4H2JA 2VG0A 4H2MA 2VG3A 1JP3A 4H3CA 3SGTA 3TH8A 5KH2A 4H38A 5KH4A 3WYIA 2VG4A 2E9DA 2E9CA 3QASA 4KT8A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 5HXQ A;  5HXT A;  2E9A A;  3WQK A;  4Q9O A;  3WQN A;  5HC8 A;  2E98 A;  2D2R A;  2VG1 A;  4ONC A;  4H2O A;  4U82 A;  5CQJ A;  3SGX A;  5HXP A;  3WYJ A;  5HXN A;  2VFW A;  1UEH A;  2DTN A;  1X07 A;  1X06 A;  5HC6 A;  2E99 A;  1F75 A;  4CMW A;  5HXO A;  1V7U A;  4Q9M A;  3UGS A;  5CQB A;  4H8E A;  3SGV A;  3WQL A;  2VG2 A;  4H3A A;  5KH5 A;  4CMX A;  1X08 A;  4CMV A;  3WQM A;  3SH0 A;  5HC7 A;  1X09 A;  4H2J A;  2VG0 A;  4H2M A;  2VG3 A;  1JP3 A;  4H3C A;  3SGT A;  3TH8 A;  5KH2 A;  4H38 A;  5KH4 A;  3WYI A;  2VG4 A;  2E9D A;  2E9C A;  3QAS A;  4KT8 A; 
#chains in the Genus database with same CATH topology
 5HXQ A;  5HXT A;  2E9A A;  3WQK A;  4Q9O A;  3WQN A;  5HC8 A;  2E98 A;  2D2R A;  2VG1 A;  4ONC A;  4H2O A;  4U82 A;  5CQJ A;  3SGX A;  5HXP A;  3WYJ A;  5HXN A;  2VFW A;  1UEH A;  2DTN A;  1X07 A;  1X06 A;  5HC6 A;  2E99 A;  1F75 A;  4CMW A;  5HXO A;  1V7U A;  4Q9M A;  3UGS A;  5CQB A;  4H8E A;  3SGV A;  3WQL A;  2VG2 A;  4H3A A;  5KH5 A;  4CMX A;  1X08 A;  4CMV A;  3WQM A;  3SH0 A;  5HC7 A;  1X09 A;  4H2J A;  2VG0 A;  4H2M A;  2VG3 A;  1JP3 A;  4H3C A;  3SGT A;  3TH8 A;  5KH2 A;  4H38 A;  5KH4 A;  3WYI A;  2VG4 A;  2E9D A;  2E9C A;  3QAS A;  4KT8 A; 
#chains in the Genus database with same CATH homology
 5HXQ A;  5HXT A;  2E9A A;  3WQK A;  4Q9O A;  3WQN A;  5HC8 A;  2E98 A;  2D2R A;  2VG1 A;  4ONC A;  4H2O A;  4U82 A;  5CQJ A;  3SGX A;  5HXP A;  3WYJ A;  5HXN A;  2VFW A;  1UEH A;  2DTN A;  1X07 A;  1X06 A;  5HC6 A;  2E99 A;  1F75 A;  4CMW A;  5HXO A;  1V7U A;  4Q9M A;  3UGS A;  5CQB A;  4H8E A;  3SGV A;  3WQL A;  2VG2 A;  4H3A A;  5KH5 A;  4CMX A;  1X08 A;  4CMV A;  3WQM A;  3SH0 A;  5HC7 A;  1X09 A;  4H2J A;  2VG0 A;  4H2M A;  2VG3 A;  1JP3 A;  4H3C A;  3SGT A;  3TH8 A;  5KH2 A;  4H38 A;  5KH4 A;  3WYI A;  2VG4 A;  2E9D A;  2E9C A;  3QAS A;  4KT8 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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