2XCEA

Structure of yncf in complex with dupnhpp
Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
129
structure length
129
Chain Sequence
TMQIKIKYLDETQTRISKIEQGDWIDLRAAEDVTIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKNFGVIQTNSMGVIDESYKGDNDFWFFPAYALRDTEIKKGDRICQFRIMKKMPAVELVEVEHL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS4 (40-51)S1 (6-9)TI4 (87-90)S10 (108-117)S2 (26-30)S5 (56-62)TII3 (105-108)S9 (102-104)S3 (34-36)TIV4 (98-101)TII1 (37-40)TII2 (53-56)S7 (79-82)S6 (72-74)TIV2 (76-79)AH1 (65-70)S8 (91-98)TI2 (74-77)TI3 (82-85)TIV3 (83-86)TI1 (11-14)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Bacillus subtilis
publication title The Structure of the Genomic Bacillus Subtilis Dutpase: Novel Features in the Phe-Lid.
pubmed doi rcsb
molecule keywords PROBABLE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE YN
total genus 24
structure length 129
sequence length 129
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.6.1.23: dUTP diphosphatase.
pdb deposition date 2010-04-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00692 dUTPase dUTPase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.40.10 Mainly Beta Distorted Sandwich Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A 2xceA01
3ECYA 2OL1A 2YZJA 2WE3A 5F9KA 1XS1A 2OKEA 3TPSA 3ZF6A 3TQZA 1PKKA 4GK6A 2Y8CA 3SO2A 1Q5UX 2HQUA 2HXDA 3F4FA 1F7PA 3KM3A 1MQ7A 2WE2A 2BSYA 3TPWA 2D4MA 1PKHA 3T6YA 5ECTA 2XCDA 3LOJA 1SLHA 3C2TA 1F7KA 1F7QA 4B0HA 1EUWA 1SEHA 3TPNA 3TTAA 1F7DA 2Y1TA 3ZF1A 3ZF3A 1F7RA 2BAZA 3ZEZA 1RN8A 2PY4A 2WE1A 3TRNA 2QLPA 3TQ3A 1PKJA 2HRMA 1SIXA 3I93A 1VYQA 2BT1A 3TPYA 2OL0A 1DUPA 3ARAA 3H6XA 4LHRA 4A6AA 3GF0A 3ZF4A 3CA9A 1XS4A 2PC5A 4OOQA 4XJCA 2D4LA 4GV8A 3ZF2A 3T70A 4AOZA 2XX6A 2HR6A 1SNFA 3MBQA 4DHKA 5CCTA 3EHWA 1F7OA 1SYLA 1XS6A 2WE0A 4GCYA 3TS6A 4OOPA 3T60A 2XY3A 5CCOA 1EU5A 2HXBA 3ARNA 2OKDA 3H6DA 3ZF5A 1DUTA 2J4HA 3TP1A 3TSLA 1DUDA 2OKBA 3TQ4A 4AO5A 4WRKA 1DUNA 2V9XA 5EDDA 3HZAA 2QXXA 1F7NA 3T64A 4AOOA 3P48A 1RNJA 1Q5HA 3C3IA 1SM8A 4APZ1 3HHQA 2R9QA 1OGHA 1SMCA 1SJNA 2XCEA 2D4NA 1DUCA 2ZDCA 3TRLA 3LQWA 3MDXA 3ZF0A 3TQ5A 2J4QA
chains in the Genus database with same CATH superfamily
3ECYA 2OL1A 2YZJA 2WE3A 5F9KA 1XS1A 2OKEA 3TPSA 3ZF6A 3TQZA 1PKKA 4GK6A 2Y8CA 3SO2A 1Q5UX 2HQUA 2HXDA 3F4FA 1F7PA 3KM3A 1MQ7A 2WE2A 2BSYA 1TULA 3TPWA 2D4MA 1PKHA 3T6YA 5ECTA 2XCDA 3LOJA 1SLHA 3C2TA 1F7KA 1F7QA 4B0HA 1EUWA 1SEHA 3TPNA 3TTAA 1F7DA 2Y1TA 3ZF1A 3ZF3A 1F7RA 2BAZA 3ZEZA 1RN8A 2PY4A 2WE1A 3TRNA 2QLPA 3TQ3A 1PKJA 2HRMA 1SIXA 3I93A 1VYQA 2BT1A 3TPYA 2OL0A 1DUPA 3ARAA 3H6XA 4LHRA 4A6AA 3GF0A 3ZF4A 3CA9A 1XS4A 2PC5A 4OOQA 4XJCA 2D4LA 4GV8A 3ZF2A 3T70A 4AOZA 2XX6A 2HR6A 1SNFA 3MBQA 4DHKA 5CCTA 3EHWA 1F7OA 1SYLA 1XS6A 2WE0A 4GCYA 3TS6A 4OOPA 3T60A 2XY3A 5CCOA 1EU5A 2HXBA 3ARNA 2OKDA 3H6DA 3ZF5A 1DUTA 2J4HA 3TP1A 3TSLA 1DUDA 2OKBA 3TQ4A 4AO5A 4WRKA 1DUNA 2V9XA 5EDDA 3HZAA 2QXXA 1F7NA 3T64A 4AOOA 3P48A 1RNJA 1Q5HA 3C3IA 1SM8A 4APZ1 3HHQA 2R9QA 1OGHA 1SMCA 1SJNA 2XCEA 2D4NA 1DUCA 2ZDCA 3TRLA 3LQWA 3MDXA 3ZF0A 3TQ5A 2J4QA
chains in the Genus database with same CATH topology
3ECYA 2OL1A 2YZJA 2WE3A 5F9KA 1XS1A 2OKEA 3TPSA 3ZF6A 3TQZA 1PKKA 4GK6A 2Y8CA 3SO2A 1Q5UX 2HQUA 2HXDA 3F4FA 1F7PA 3KM3A 1MQ7A 2WE2A 2BSYA 3TPWA 2D4MA 1PKHA 3T6YA 5ECTA 2XCDA 3LOJA 1SLHA 3C2TA 1F7KA 1F7QA 4B0HA 1EUWA 1SEHA 3TPNA 3TTAA 1F7DA 2Y1TA 3ZF1A 3ZF3A 1F7RA 2BAZA 3ZEZA 1RN8A 2PY4A 2WE1A 3TRNA 2QLPA 3TQ3A 1PKJA 2HRMA 1SIXA 3I93A 1VYQA 2BT1A 3TPYA 2OL0A 1DUPA 3ARAA 3H6XA 4LHRA 4A6AA 3GF0A 3ZF4A 3CA9A 1XS4A 2PC5A 4OOQA 4XJCA 2D4LA 4GV8A 3ZF2A 3T70A 4AOZA 2XX6A 2HR6A 1SNFA 3MBQA 4DHKA 5CCTA 3EHWA 1F7OA 1SYLA 1XS6A 2WE0A 4GCYA 3TS6A 4OOPA 3T60A 2XY3A 5CCOA 1EU5A 2HXBA 3ARNA 2OKDA 3H6DA 3ZF5A 1DUTA 2J4HA 3TP1A 3TSLA 1DUDA 2OKBA 3TQ4A 4AO5A 4WRKA 1DUNA 2V9XA 5EDDA 3HZAA 2QXXA 1F7NA 3T64A 4AOOA 3P48A 1RNJA 1Q5HA 3C3IA 1SM8A 4APZ1 3HHQA 2R9QA 1OGHA 1SMCA 1SJNA 2XCEA 2D4NA 1DUCA 2ZDCA 3TRLA 3LQWA 3MDXA 3ZF0A 3TQ5A 2J4QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ECY A;  2OL1 A;  2YZJ A;  2WE3 A;  5F9K A;  1XS1 A;  2OKE A;  3TPS A;  3ZF6 A;  3TQZ A;  1PKK A;  4GK6 A;  2Y8C A;  3SO2 A;  1Q5U X;  2HQU A;  2HXD A;  3F4F A;  1F7P A;  3KM3 A;  1MQ7 A;  2WE2 A;  2BSY A;  3TPW A;  2D4M A;  1PKH A;  3T6Y A;  5ECT A;  2XCD A;  3LOJ A;  1SLH A;  3C2T A;  1F7K A;  1F7Q A;  4B0H A;  1EUW A;  1SEH A;  3TPN A;  3TTA A;  1F7D A;  2Y1T A;  3ZF1 A;  3ZF3 A;  1F7R A;  2BAZ A;  3ZEZ A;  1RN8 A;  2PY4 A;  2WE1 A;  3TRN A;  2QLP A;  3TQ3 A;  1PKJ A;  2HRM A;  1SIX A;  3I93 A;  1VYQ A;  2BT1 A;  3TPY A;  2OL0 A;  1DUP A;  3ARA A;  3H6X A;  4LHR A;  4A6A A;  3GF0 A;  3ZF4 A;  3CA9 A;  1XS4 A;  2PC5 A;  4OOQ A;  4XJC A;  2D4L A;  4GV8 A;  3ZF2 A;  3T70 A;  4AOZ A;  2XX6 A;  2HR6 A;  1SNF A;  3MBQ A;  4DHK A;  5CCT A;  3EHW A;  1F7O A;  1SYL A;  1XS6 A;  2WE0 A;  4GCY A;  3TS6 A;  4OOP A;  3T60 A;  2XY3 A;  5CCO A;  1EU5 A;  2HXB A;  3ARN A;  2OKD A;  3H6D A;  3ZF5 A;  1DUT A;  2J4H A;  3TP1 A;  3TSL A;  1DUD A;  2OKB A;  3TQ4 A;  4AO5 A;  4WRK A;  1DUN A;  2V9X A;  5EDD A;  3HZA A;  2QXX A;  1F7N A;  3T64 A;  4AOO A;  3P48 A;  1RNJ A;  1Q5H A;  3C3I A;  1SM8 A;  4APZ 1;  3HHQ A;  2R9Q A;  1OGH A;  1SMC A;  1SJN A;  2XCE A;  2D4N A;  1DUC A;  2ZDC A;  3TRL A;  3LQW A;  3MDX A;  3ZF0 A;  3TQ5 A;  2J4Q A; 
#chains in the Genus database with same CATH topology
 3ECY A;  2OL1 A;  2YZJ A;  2WE3 A;  5F9K A;  1XS1 A;  2OKE A;  3TPS A;  3ZF6 A;  3TQZ A;  1PKK A;  4GK6 A;  2Y8C A;  3SO2 A;  1Q5U X;  2HQU A;  2HXD A;  3F4F A;  1F7P A;  3KM3 A;  1MQ7 A;  2WE2 A;  2BSY A;  1TUL A;  3TPW A;  2D4M A;  1PKH A;  3T6Y A;  5ECT A;  2XCD A;  3LOJ A;  1SLH A;  3C2T A;  1F7K A;  1F7Q A;  4B0H A;  1EUW A;  1SEH A;  3TPN A;  3TTA A;  1F7D A;  2Y1T A;  3ZF1 A;  3ZF3 A;  1F7R A;  2BAZ A;  3ZEZ A;  1RN8 A;  2PY4 A;  2WE1 A;  3TRN A;  2QLP A;  3TQ3 A;  1PKJ A;  2HRM A;  1SIX A;  3I93 A;  1VYQ A;  2BT1 A;  3TPY A;  2OL0 A;  1DUP A;  3ARA A;  3H6X A;  4LHR A;  4A6A A;  3GF0 A;  3ZF4 A;  3CA9 A;  1XS4 A;  2PC5 A;  4OOQ A;  4XJC A;  2D4L A;  4GV8 A;  3ZF2 A;  3T70 A;  4AOZ A;  2XX6 A;  2HR6 A;  1SNF A;  3MBQ A;  4DHK A;  5CCT A;  3EHW A;  1F7O A;  1SYL A;  1XS6 A;  2WE0 A;  4GCY A;  3TS6 A;  4OOP A;  3T60 A;  2XY3 A;  5CCO A;  1EU5 A;  2HXB A;  3ARN A;  2OKD A;  3H6D A;  3ZF5 A;  1DUT A;  2J4H A;  3TP1 A;  3TSL A;  1DUD A;  2OKB A;  3TQ4 A;  4AO5 A;  4WRK A;  1DUN A;  2V9X A;  5EDD A;  3HZA A;  2QXX A;  1F7N A;  3T64 A;  4AOO A;  3P48 A;  1RNJ A;  1Q5H A;  3C3I A;  1SM8 A;  4APZ 1;  3HHQ A;  2R9Q A;  1OGH A;  1SMC A;  1SJN A;  2XCE A;  2D4N A;  1DUC A;  2ZDC A;  3TRL A;  3LQW A;  3MDX A;  3ZF0 A;  3TQ5 A;  2J4Q A; 
#chains in the Genus database with same CATH homology
 3ECY A;  2OL1 A;  2YZJ A;  2WE3 A;  5F9K A;  1XS1 A;  2OKE A;  3TPS A;  3ZF6 A;  3TQZ A;  1PKK A;  4GK6 A;  2Y8C A;  3SO2 A;  1Q5U X;  2HQU A;  2HXD A;  3F4F A;  1F7P A;  3KM3 A;  1MQ7 A;  2WE2 A;  2BSY A;  3TPW A;  2D4M A;  1PKH A;  3T6Y A;  5ECT A;  2XCD A;  3LOJ A;  1SLH A;  3C2T A;  1F7K A;  1F7Q A;  4B0H A;  1EUW A;  1SEH A;  3TPN A;  3TTA A;  1F7D A;  2Y1T A;  3ZF1 A;  3ZF3 A;  1F7R A;  2BAZ A;  3ZEZ A;  1RN8 A;  2PY4 A;  2WE1 A;  3TRN A;  2QLP A;  3TQ3 A;  1PKJ A;  2HRM A;  1SIX A;  3I93 A;  1VYQ A;  2BT1 A;  3TPY A;  2OL0 A;  1DUP A;  3ARA A;  3H6X A;  4LHR A;  4A6A A;  3GF0 A;  3ZF4 A;  3CA9 A;  1XS4 A;  2PC5 A;  4OOQ A;  4XJC A;  2D4L A;  4GV8 A;  3ZF2 A;  3T70 A;  4AOZ A;  2XX6 A;  2HR6 A;  1SNF A;  3MBQ A;  4DHK A;  5CCT A;  3EHW A;  1F7O A;  1SYL A;  1XS6 A;  2WE0 A;  4GCY A;  3TS6 A;  4OOP A;  3T60 A;  2XY3 A;  5CCO A;  1EU5 A;  2HXB A;  3ARN A;  2OKD A;  3H6D A;  3ZF5 A;  1DUT A;  2J4H A;  3TP1 A;  3TSL A;  1DUD A;  2OKB A;  3TQ4 A;  4AO5 A;  4WRK A;  1DUN A;  2V9X A;  5EDD A;  3HZA A;  2QXX A;  1F7N A;  3T64 A;  4AOO A;  3P48 A;  1RNJ A;  1Q5H A;  3C3I A;  1SM8 A;  4APZ 1;  3HHQ A;  2R9Q A;  1OGH A;  1SMC A;  1SJN A;  2XCE A;  2D4N A;  1DUC A;  2ZDC A;  3TRL A;  3LQW A;  3MDX A;  3ZF0 A;  3TQ5 A;  2J4Q A; 
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