The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
16
|
sequence length |
108
|
structure length |
108
|
Chain Sequence |
MPNFSHTCSSINYDPDSTILSAECQARDGEWLPTELRLSDHIGNIDGELQFGDQNFQETCQDCRLEFGDGEQSVWLVCTCQTMDGEWKSTQILLDSQIDNNDSQLEIG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Solution Structure of the Monovalent Lectin Microvirin in Complex with Man(Alpha)(1-2)Man Provides a Basis for Anti-HIV Activity with Low Toxicity.
pubmed doi rcsb |
| molecule tags |
Sugar binding protein
|
| source organism |
Microcystis aeruginosa
|
| molecule keywords |
MANNAN-BINDING LECTIN
|
| total genus |
16
|
| structure length |
108
|
| sequence length |
108
|
| ec nomenclature | |
| pdb deposition date | 2011-05-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF08881 | CVNH | CVNH domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | HIV-inactivating Protein, Cyanovirin-n | Cyanovirin-N |
#chains in the Genus database with same CATH superfamily 2EZM A; 1L5B A; 2RP3 A; 3CZZ A; 3LHC A; 1L5E A; 3GXY A; 3HNX A; 1LOM A; 2RDK A; 3HP8 A; 2Z21 A; 1IIY A; 3S3Z A; 4J4E A; 2JZK A; 5C8Q B; 3HNU X; 2L2F A; 3S3Y A; 3GXZ A; 2L9Y A; 3EZM A; 2Y1S A; 2YHH A; 4J4F A; 2KJL A; 2EZN A; 2JZL A; 1J4V A; 2JZJ A; 5C8O A; 5C8P A; 1N02 A; 2PYS A; 4J4C A; #chains in the Genus database with same CATH topology 2EZM A; 1L5B A; 2RP3 A; 3CZZ A; 3LHC A; 1L5E A; 3GXY A; 3HNX A; 1LOM A; 2RDK A; 3HP8 A; 2Z21 A; 1IIY A; 3S3Z A; 4J4E A; 2JZK A; 5C8Q B; 3HNU X; 2L2F A; 3S3Y A; 3GXZ A; 2L9Y A; 3EZM A; 2Y1S A; 2YHH A; 4J4F A; 2KJL A; 2EZN A; 2JZL A; 1J4V A; 2JZJ A; 5C8O A; 5C8P A; 1N02 A; 2PYS A; 4J4C A; #chains in the Genus database with same CATH homology 2EZM A; 1L5B A; 2RP3 A; 3CZZ A; 3LHC A; 1L5E A; 3GXY A; 3HNX A; 1LOM A; 2RDK A; 3HP8 A; 2Z21 A; 1IIY A; 3S3Z A; 4J4E A; 2JZK A; 5C8Q B; 3HNU X; 2L2F A; 3S3Y A; 3GXZ A; 2L9Y A; 3EZM A; 2Y1S A; 2YHH A; 4J4F A; 2KJL A; 2EZN A; 2JZL A; 1J4V A; 2JZJ A; 5C8O A; 5C8P A; 1N02 A; 2PYS A; 4J4C A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
