2ZHZA

Crystal structure of a pduo-type atp:cobalamin adenosyltransferase from burkholderia thailandensis
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
148
structure length
148
Chain Sequence
DDARIAAIGDVDELNSQIGVLLAEPLPDDVRAALSAIQHDLFDLGGELCIPGHAAITDAHLARLDGWLAHYNGQLPPLEEFILPGGARGAALAHVCRTVCRRAERSIVALGASEPLNAAPRRYVNRLSDLLFVLARVLNRAAGGADVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a PduO-type ATP:cobalamin adenosyltransferase from Burkholderia thailandensis.
pubmed doi rcsb
molecule tags Transferase
source organism Burkholderia thailandensis
molecule keywords ATP:cob(I)alamin adenosyltransferase, putative
total genus 60
structure length 148
sequence length 148
chains with identical sequence B, C
ec nomenclature ec 2.5.1.17: Corrinoid adenosyltransferase.
pdb deposition date 2008-02-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01923 Cob_adeno_trans Cobalamin adenosyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1200.10 Mainly Alpha Up-down Bundle Hypothetical Protein Ta1238; Chain: A; Cobalamin adenosyltransferase-like 2zhzA00
5CY5B 2NT8A 4NWPA 2ZHZA 3GAJA 4NWQA 1NOGA 2R6TA 3KE4A 3GAIA 2R6XA 3CI4A 3CI3A 2IDXA 5CY5A 1WY1A 1WOZA 3KE5A 3GAHA 1NIGA 2AH6A 1RTYA 1WVTA 2G2DA 2ZHYA 3CI1A
chains in the Genus database with same CATH superfamily
5CY5B 2NT8A 4NWPA 2ZHZA 3GAJA 4NWQA 1NOGA 2R6TA 3KE4A 3GAIA 2R6XA 3CI4A 3CI3A 2IDXA 5CY5A 1WY1A 1WOZA 3KE5A 3GAHA 1NIGA 2AH6A 1RTYA 1WVTA 2G2DA 2ZHYA 3CI1A
chains in the Genus database with same CATH topology
5CY5B 2NT8A 4NWPA 2ZHZA 3GAJA 4NWQA 1NOGA 2R6TA 3KE4A 3GAIA 2R6XA 3CI4A 3CI3A 2IDXA 5CY5A 1WY1A 1WOZA 3KE5A 3GAHA 1NIGA 2AH6A 1RTYA 1WVTA 2G2DA 2ZHYA 3CI1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CY5 B;  2NT8 A;  4NWP A;  2ZHZ A;  3GAJ A;  4NWQ A;  1NOG A;  2R6T A;  3KE4 A;  3GAI A;  2R6X A;  3CI4 A;  3CI3 A;  2IDX A;  5CY5 A;  1WY1 A;  1WOZ A;  3KE5 A;  3GAH A;  1NIG A;  2AH6 A;  1RTY A;  1WVT A;  2G2D A;  2ZHY A;  3CI1 A; 
#chains in the Genus database with same CATH topology
 5CY5 B;  2NT8 A;  4NWP A;  2ZHZ A;  3GAJ A;  4NWQ A;  1NOG A;  2R6T A;  3KE4 A;  3GAI A;  2R6X A;  3CI4 A;  3CI3 A;  2IDX A;  5CY5 A;  1WY1 A;  1WOZ A;  3KE5 A;  3GAH A;  1NIG A;  2AH6 A;  1RTY A;  1WVT A;  2G2D A;  2ZHY A;  3CI1 A; 
#chains in the Genus database with same CATH homology
 5CY5 B;  2NT8 A;  4NWP A;  2ZHZ A;  3GAJ A;  4NWQ A;  1NOG A;  2R6T A;  3KE4 A;  3GAI A;  2R6X A;  3CI4 A;  3CI3 A;  2IDX A;  5CY5 A;  1WY1 A;  1WOZ A;  3KE5 A;  3GAH A;  1NIG A;  2AH6 A;  1RTY A;  1WVT A;  2G2D A;  2ZHY A;  3CI1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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