2ZPD | Genus

Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	49
sequence length	183
structure length	183
Chain Sequence	DAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKLPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 183 atoms

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183 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release. pubmed doi rcsb
molecule keywords	Outer-membrane lipoprotein carrier protein
molecule tags	Protein transport
source organism	Escherichia coli
total genus	49
structure length	183
sequence length	183
ec nomenclature
pdb deposition date	2008-07-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03548	LolA	Outer membrane lipoprotein carrier protein LolA

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.50.20.10	Mainly Beta	Clam	outer membrane lipoprotein receptor (LolB), chain A	Lipoprotein localisation LolA/LolB/LppX	2zpdA00

2YZYA 1UA8A 2W7QA 1IWMA 3BK5A 3WJUA 1IWNA 3M4WA 2ZPDA 4MXTA 3WJVA 2ZPCA 3KSNA 2V43A 3WJTA 4KI3A 1IWLA 4Z48A 2P4BA 2V42A 3BUUA
chains in the Genus database with same CATH superfamily

2ZF3A 2YZYA 1UA8A 2ZF4A 4ZRAA 2W7QA 3BMZA 1IWMA 3BK5A 3WJUA 1IWNA 3M4WA 3MH8A 2ZPDA 4MXTA 3WJVA 4QA8A 2ZPCA 3MH9A 3KSNA 4EGDA 2V43A 2BYOA 3WJTA 4KI3A 1IWLA 4Z48A 2P4BA 2V42A 3MHAA 3BUUA 4EG9A
chains in the Genus database with same CATH topology

2YZYA 1UA8A 2W7QA 1IWMA 3BK5A 3WJUA 1IWNA 3M4WA 2ZPDA 4MXTA 3WJVA 2ZPCA 3KSNA 2V43A 3WJTA 4KI3A 1IWLA 4Z48A 2P4BA 2V42A 3BUUA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2YZY A;  1UA8 A;  2W7Q A;  1IWM A;  3BK5 A;  3WJU A;  1IWN A;  3M4W A;  2ZPD A;  4MXT A;  3WJV A;  2ZPC A;  3KSN A;  2V43 A;  3WJT A;  4KI3 A;  1IWL A;  4Z48 A;  2P4B A;  2V42 A;  3BUU A; 
#chains in the Genus database with same CATH topology
 2ZF3 A;  2YZY A;  1UA8 A;  2ZF4 A;  4ZRA A;  2W7Q A;  3BMZ A;  1IWM A;  3BK5 A;  3WJU A;  1IWN A;  3M4W A;  3MH8 A;  2ZPD A;  4MXT A;  3WJV A;  4QA8 A;  2ZPC A;  3MH9 A;  3KSN A;  4EGD A;  2V43 A;  2BYO A;  3WJT A;  4KI3 A;  1IWL A;  4Z48 A;  2P4B A;  2V42 A;  3MHA A;  3BUU A;  4EG9 A; 
#chains in the Genus database with same CATH homology
 2YZY A;  1UA8 A;  2W7Q A;  1IWM A;  3BK5 A;  3WJU A;  1IWN A;  3M4W A;  2ZPD A;  4MXT A;  3WJV A;  2ZPC A;  3KSN A;  2V43 A;  3WJT A;  4KI3 A;  1IWL A;  4Z48 A;  2P4B A;  2V42 A;  3BUU A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2ZPDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations